NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GIO7OMY02FUAQP

Scaffold GIO7OMY02FUAQP


Overview

Basic Information
Taxon OID2170459010 Open in IMG/M
Scaffold IDGIO7OMY02FUAQP Open in IMG/M
Source Dataset NameGrass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center454 Life Sciences
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)512
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil → Grass Soil Microbial Communities From Rothamsted Park Plot 3D, Harpenden, Uk

Source Dataset Sampling Location
Location NameRothamsted, Harpenden, UK
CoordinatesLat. (o)51.804241Long. (o)-0.372114Alt. (m)Depth (m)0 to .09
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F090815Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
F62_00907620F090815AGGTGGMLNQKHHSCNVRTQQEDGHFRVYYQHRYPNGPAENRDTRRFNSLEEAEQFAKYVRRANRIYAELCGENTEGVA
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Institute for Fundamental Biomedical Research
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