NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2200180134

Scaffold 2200180134


Overview

Basic Information
Taxon OID2199352008 Open in IMG/M
Scaffold ID2200180134 Open in IMG/M
Source Dataset NameThermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3137
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Grass → Composting → Bioreactor → Rice-Straw Enriched Compost → Rice-Straw Enriched Compost Microbial Community From Berkeley

Source Dataset Sampling Location
Location NameDavis, California, USA
CoordinatesLat. (o)38.5402727Long. (o)-121.7500776Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011252Metagenome / Metatranscriptome293Y

Sequences

Protein IDFamilyRBSSequence
2200520547F011252GGAGGVSQYVFVDPGASFALPDSFDFEDYIETERELWALFPETEGKRANFGQVGLTAQIYVEVPDDGSDPGLDETYILMPCPDKTMKPIRMKACRRLTLTEYRMGHLTALKLMGKMNAAARVMQEVGRQILGEEVMEEVRARMQPKEEDDDENGNE
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