Basic Information | |
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Taxon OID | 2236876009 Open in IMG/M |
Scaffold ID | none_p267221 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p8-Hyp-75m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of South Carolina |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 502 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Newport Hydroline 10 km (NH10) | |||||||
Coordinates | Lat. (o) | 44.651 | Long. (o) | -124.295 | Alt. (m) | Depth (m) | 75 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018173 | Metagenome / Metatranscriptome | 236 | N |
Protein ID | Family | RBS | Sequence |
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none_2672212 | F018173 | N/A | MAIIYSYPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTSWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYI |
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