Sample 2236876009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 2236876009

2236876009: Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p8-Hyp-75m

Overview

Basic Information
IMG/M Taxon OID	2236876009 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0047387 \| Gp0054210 \| Ga0010951
Sample Name	Marine microbial communities from Columbia River, CM, sample from Newport Hydroline, GS310-0p8-Hyp-75m
Sequencing Status	Permanent Draft
Sequencing Center	University of South Carolina
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	95066886
Sequencing Scaffolds	14
Novel Protein Genes	15
Associated Families	11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine And Estuarine Microbial Communities From Columbia River Coastal Margin
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → estuary → estuarine water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Newport Hydroline 10 km (NH10)
Coordinates	Lat. (^o)	44.651	Long. (^o)	-124.295	Alt. (m)	N/A	Depth (m)	75
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000200	Metagenome / Metatranscriptome	1633	Y
F006870	Metagenome / Metatranscriptome	363	Y
F015151	Metagenome / Metatranscriptome	257	Y
F018173	Metagenome / Metatranscriptome	236	N
F025141	Metagenome / Metatranscriptome	203	Y
F055206	Metagenome / Metatranscriptome	139	Y
F059342	Metagenome / Metatranscriptome	134	N
F093867	Metagenome / Metatranscriptome	106	N
F101148	Metagenome / Metatranscriptome	102	N
F103255	Metagenome / Metatranscriptome	101	N
F104912	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
none_p038927	Not Available	541	Open in IMG/M
none_p062732	Not Available	585	Open in IMG/M
none_p067881	Not Available	517	Open in IMG/M
none_p085654	All Organisms → cellular organisms → Archaea	516	Open in IMG/M
none_p099931	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	501	Open in IMG/M
none_p103440	Not Available	521	Open in IMG/M
none_p105655	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	516	Open in IMG/M
none_p129031	Not Available	520	Open in IMG/M
none_p129392	Not Available	522	Open in IMG/M
none_p135101	Not Available	518	Open in IMG/M
none_p147937	Not Available	527	Open in IMG/M
none_p152507	Not Available	504	Open in IMG/M
none_p223555	Not Available	504	Open in IMG/M
none_p267221	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
none_p038927	none_0389271	F055206	IILESSVFRRIGMKFLYVDVDNRKVVGLFRNSNEEIIKLNIRELQILAQKERYILNSNILPELLEALKAMGQYQKANRPWWMRIFSVLD
none_p055724	none_0557242	F000200	MKMIKVYDFKCTEGHYFEEFVEDGVTTSRCGCGANATRVASATPCVLDGASGDFPGRHIKWVREHEQAERK
none_p062732	none_0627321	F093867	MKKLIVLAVIFQTITSCGENSLPITNQKNVRLDSFESMRYNIFEEVKEDSLEIAKVM
none_p067881	none_0678811	F018173	VADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFYLELGATGXDSVDTSDTTFIDMTPTAPTTGNVEITASLSATGTPDN
none_p085654	none_0856541	F025141	TIQYYMIQCEYCPRGFIETTNGLAEKTFHELLHEPEVVNK
none_p099931	none_0999311	F101148	MTTKISITTAVKILNSNKDFIFYKVEDNKVIDFTLTNDISRFRTRYNNKFKIVADIKKQIKTNLKIN
none_p103440	none_1034402	F059342	MSTTKYNGYTDFNTWRVFHDTLSGIDFESKVTADELKEISLGIVLSNFEMQRGSHLVEEYAELFIELADFEDIAESINYDIK
none_p105655	none_1056551	F006870	MKKISLFFLLVLHLALTSKASSLETKLSPQGSDKYNFHIIGDAKTSEKKLRDVFKNKVSEVCGTRFEIINIKTDYLNNEGLKNN
none_p129031	none_1290311	F015151	MITLKNGLILSADNNGFESFNHLTAKIDPKSFTKFNELPDIFYKELFEDDRTLLTRIDHPELAMILERTKR
none_p129392	none_1293921	F018173	MAIIYSYPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIG
none_p135101	none_1351011	F015151	VITLKNGLIISANNDGFESMNHLTGKIDRDSFTEFKDLPDIFYKELLEDDRNTLTKIEDETLVTILE
none_p147937	none_1479371	F103255	TADLLQELSMYINLNYEDDWYLQEKVNELKTRIYEQ
none_p152507	none_1525071	F104912	YVAQKRKADAIQHRKTVTQGEYCSGLTAKEYRKVKTQGKGSGSKGKSFSHTKLWNHYNQPVTTN
none_p223555	none_2235551	F018173	KAVADYLNINGKVAIAGQMNYQFVQDPSFKSGTFAFAAGSGGGTPWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYIGGNGSIDMDHYYTLVNFLYLELGATGVDSVDTSDTTFIDMTPTTPTTVM
none_p267221	none_2672212	F018173	MAIIYSYPYDQTITDTDAWVGTDSVNRQTKQYTAKAVADYLNINGKVAIAGQMNYQFVQDPSFKAGTFAFAAGSGGGTSWSSITSIVISNMDLSGQIVSPFLEYLVDEQVLFQDVAGKGSFGHYIMRGYTQIGTTNFYTLTLEYI

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