NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BS_KBA_SWE12_21mDRAFT_c10004408

Scaffold BS_KBA_SWE12_21mDRAFT_c10004408


Overview

Basic Information
Taxon OID3300000124 Open in IMG/M
Scaffold IDBS_KBA_SWE12_21mDRAFT_c10004408 Open in IMG/M
Source Dataset NameMarine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 12_21m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4889
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Sediment → Marine → Marine Microbial Communities From Chronically Polluted Sediments In Four Geographic Locations

Source Dataset Sampling Location
Location NameKBA site, Vaertahamnen, Baltic Sea, Sweden
CoordinatesLat. (o)59.363333Long. (o)18.119167Alt. (m)Depth (m)21
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F003327Metagenome / Metatranscriptome494Y
F004234Metagenome / Metatranscriptome447Y
F015420Metagenome / Metatranscriptome255Y
F019928Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
BS_KBA_SWE12_21mDRAFT_1000440810F004234GAGMNLIDLYKRDNTYFSNWKTSYDSDVYIVGTIEPFTYNATETDDEWLSHFILNETNLNLLKSKLYDK*
BS_KBA_SWE12_21mDRAFT_1000440812F003327GAGMINEFTQLAIEVQDAIANGNYTHQKYLKFREWYFKSYEGSKRNANRDFKMFDLMYGLDVPIKNDDNEDI*
BS_KBA_SWE12_21mDRAFT_100044083F019928N/AMKHSGILSFLVFGCGYLTGIALVFEPALYLKFAGASIIGYLSFILALQWEGQE*
BS_KBA_SWE12_21mDRAFT_100044086F001808N/AMRYLAIILLLSSCSAQYHLNKAIKKGYTCEETGDTIRITTLDSIPVIINNDIIWEKFITTKDTIIKYNTVYVPKTRLDKKIEYRLKVKTIYKDRIVEKAQAKATRPRANGNLSLLFVGVGIGLLLSYLFKFAREKYLF*
BS_KBA_SWE12_21mDRAFT_100044089F015420N/AMKKLIKYFTPVGAEQIAFAVAMLTVTTVILSILFLFTFLELIL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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