NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPjun08P41300mDRAFT_c1002964

Scaffold LPjun08P41300mDRAFT_c1002964


Overview

Basic Information
Taxon OID3300000141 Open in IMG/M
Scaffold IDLPjun08P41300mDRAFT_c1002964 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3514
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP4, Pacific Ocean
CoordinatesLat. (o)48.65Long. (o)-126.666667Alt. (m)Depth (m)1300
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044732Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
LPjun08P41300mDRAFT_10029643F044732AGGAGMTEHYFVQVLADNGEVLRWEALDKEQADFIFKQEVAKNGAENCTTGKTAGLNSNWVHRW*

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