Sample 3300000141

3300000141: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300m

Overview

Basic Information
IMG/M Taxon OID	3300000141 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0046785 \| Gp0053607 \| Ga0026196
Sample Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300m
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	115006357
Sequencing Scaffolds	56
Novel Protein Genes	62
Associated Families	55

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3
Not Available	18
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → Viruses → Predicted Viral	8
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Candidatus Nitromaritima → Candidatus Nitromaritima sp. SCGC AAA799-A02	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine aphotic zone → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	P4, Pacific Ocean
Coordinates	Lat. (^o)	48.65	Long. (^o)	-126.666667	Alt. (m)	N/A	Depth (m)	1300
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011620	Metagenome / Metatranscriptome	289	Y
F013190	Metagenome / Metatranscriptome	273	Y
F016325	Metagenome / Metatranscriptome	248	Y
F018452	Metagenome	235	Y
F021319	Metagenome	219	N
F022760	Metagenome / Metatranscriptome	213	Y
F022907	Metagenome / Metatranscriptome	212	Y
F023366	Metagenome / Metatranscriptome	210	N
F023453	Metagenome / Metatranscriptome	210	Y
F025141	Metagenome / Metatranscriptome	203	Y
F025145	Metagenome / Metatranscriptome	203	Y
F025151	Metagenome / Metatranscriptome	203	Y
F029246	Metagenome / Metatranscriptome	189	Y
F029905	Metagenome / Metatranscriptome	187	Y
F030885	Metagenome / Metatranscriptome	184	Y
F031535	Metagenome	182	N
F031657	Metagenome / Metatranscriptome	182	Y
F032446	Metagenome / Metatranscriptome	180	Y
F033591	Metagenome	177	Y
F034336	Metagenome / Metatranscriptome	175	N
F037947	Metagenome / Metatranscriptome	167	Y
F038863	Metagenome / Metatranscriptome	165	Y
F039346	Metagenome / Metatranscriptome	164	Y
F040335	Metagenome / Metatranscriptome	162	N
F042029	Metagenome / Metatranscriptome	159	Y
F044590	Metagenome	154	Y
F044731	Metagenome / Metatranscriptome	154	Y
F044732	Metagenome / Metatranscriptome	154	Y
F045374	Metagenome / Metatranscriptome	153	Y
F050430	Metagenome / Metatranscriptome	145	N
F052866	Metagenome / Metatranscriptome	142	N
F055206	Metagenome / Metatranscriptome	139	Y
F059362	Metagenome / Metatranscriptome	134	Y
F062844	Metagenome	130	N
F066128	Metagenome / Metatranscriptome	127	Y
F066858	Metagenome / Metatranscriptome	126	N
F070217	Metagenome / Metatranscriptome	123	N
F074151	Metagenome	120	Y
F077773	Metagenome / Metatranscriptome	117	Y
F078841	Metagenome / Metatranscriptome	116	N
F083231	Metagenome / Metatranscriptome	113	Y
F085813	Metagenome	111	N
F086196	Metagenome / Metatranscriptome	111	Y
F087322	Metagenome	110	Y
F090333	Metagenome / Metatranscriptome	108	Y
F090619	Metagenome / Metatranscriptome	108	Y
F094427	Metagenome / Metatranscriptome	106	Y
F097662	Metagenome / Metatranscriptome	104	N
F099440	Metagenome / Metatranscriptome	103	N
F099871	Metagenome / Metatranscriptome	103	N
F100407	Metagenome / Metatranscriptome	102	N
F101292	Metagenome / Metatranscriptome	102	N
F101330	Metagenome / Metatranscriptome	102	N
F105860	Metagenome	100	N
F105908	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
LPjun08P41300mDRAFT_c1000041	All Organisms → cellular organisms → Bacteria	20357	Open in IMG/M
LPjun08P41300mDRAFT_c1000324	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	9331	Open in IMG/M
LPjun08P41300mDRAFT_c1000380	Not Available	8932	Open in IMG/M
LPjun08P41300mDRAFT_c1000660	Not Available	7183	Open in IMG/M
LPjun08P41300mDRAFT_c1000757	Not Available	6732	Open in IMG/M
LPjun08P41300mDRAFT_c1001433	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	5071	Open in IMG/M
LPjun08P41300mDRAFT_c1001492	Not Available	4956	Open in IMG/M
LPjun08P41300mDRAFT_c1001542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	4883	Open in IMG/M
LPjun08P41300mDRAFT_c1001605	All Organisms → cellular organisms → Bacteria → Proteobacteria	4786	Open in IMG/M
LPjun08P41300mDRAFT_c1001768	All Organisms → cellular organisms → Bacteria	4565	Open in IMG/M
LPjun08P41300mDRAFT_c1002090	All Organisms → Viruses → Predicted Viral	4181	Open in IMG/M
LPjun08P41300mDRAFT_c1002097	All Organisms → Viruses → Predicted Viral	4170	Open in IMG/M
LPjun08P41300mDRAFT_c1002337	Not Available	3950	Open in IMG/M
LPjun08P41300mDRAFT_c1002446	All Organisms → Viruses → Predicted Viral	3861	Open in IMG/M
LPjun08P41300mDRAFT_c1002964	All Organisms → cellular organisms → Bacteria → Proteobacteria	3514	Open in IMG/M
LPjun08P41300mDRAFT_c1003319	All Organisms → Viruses → Predicted Viral	3302	Open in IMG/M
LPjun08P41300mDRAFT_c1003581	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	3174	Open in IMG/M
LPjun08P41300mDRAFT_c1003872	Not Available	3034	Open in IMG/M
LPjun08P41300mDRAFT_c1003912	All Organisms → Viruses → Predicted Viral	3018	Open in IMG/M
LPjun08P41300mDRAFT_c1004382	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	2833	Open in IMG/M
LPjun08P41300mDRAFT_c1004677	All Organisms → Viruses → Predicted Viral	2733	Open in IMG/M
LPjun08P41300mDRAFT_c1004804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2693	Open in IMG/M
LPjun08P41300mDRAFT_c1004985	All Organisms → cellular organisms → Bacteria	2639	Open in IMG/M
LPjun08P41300mDRAFT_c1005538	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	2484	Open in IMG/M
LPjun08P41300mDRAFT_c1005820	Not Available	2406	Open in IMG/M
LPjun08P41300mDRAFT_c1007480	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2056	Open in IMG/M
LPjun08P41300mDRAFT_c1007725	All Organisms → Viruses → Predicted Viral	2014	Open in IMG/M
LPjun08P41300mDRAFT_c1008473	Not Available	1895	Open in IMG/M
LPjun08P41300mDRAFT_c1008633	Not Available	1870	Open in IMG/M
LPjun08P41300mDRAFT_c1008906	All Organisms → Viruses → Predicted Viral	1834	Open in IMG/M
LPjun08P41300mDRAFT_c1010331	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1662	Open in IMG/M
LPjun08P41300mDRAFT_c1011618	All Organisms → cellular organisms → Archaea	1531	Open in IMG/M
LPjun08P41300mDRAFT_c1012458	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1455	Open in IMG/M
LPjun08P41300mDRAFT_c1013653	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
LPjun08P41300mDRAFT_c1014100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium	1329	Open in IMG/M
LPjun08P41300mDRAFT_c1015879	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus	1220	Open in IMG/M
LPjun08P41300mDRAFT_c1017657	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium TMED214	1128	Open in IMG/M
LPjun08P41300mDRAFT_c1017811	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1121	Open in IMG/M
LPjun08P41300mDRAFT_c1020234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1021	Open in IMG/M
LPjun08P41300mDRAFT_c1020940	All Organisms → Viruses	994	Open in IMG/M
LPjun08P41300mDRAFT_c1023626	Not Available	904	Open in IMG/M
LPjun08P41300mDRAFT_c1024909	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote	868	Open in IMG/M
LPjun08P41300mDRAFT_c1026759	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	822	Open in IMG/M
LPjun08P41300mDRAFT_c1026898	Not Available	819	Open in IMG/M
LPjun08P41300mDRAFT_c1028106	Not Available	792	Open in IMG/M
LPjun08P41300mDRAFT_c1028993	Not Available	774	Open in IMG/M
LPjun08P41300mDRAFT_c1029235	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	769	Open in IMG/M
LPjun08P41300mDRAFT_c1033272	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
LPjun08P41300mDRAFT_c1036380	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Candidatus Nitromaritima → Candidatus Nitromaritima sp. SCGC AAA799-A02	655	Open in IMG/M
LPjun08P41300mDRAFT_c1037920	Not Available	635	Open in IMG/M
LPjun08P41300mDRAFT_c1038608	Not Available	627	Open in IMG/M
LPjun08P41300mDRAFT_c1039876	Not Available	613	Open in IMG/M
LPjun08P41300mDRAFT_c1042043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	591	Open in IMG/M
LPjun08P41300mDRAFT_c1042234	Not Available	589	Open in IMG/M
LPjun08P41300mDRAFT_c1045753	All Organisms → cellular organisms → Archaea	557	Open in IMG/M
LPjun08P41300mDRAFT_c1052024	Not Available	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
LPjun08P41300mDRAFT_c1000041	LPjun08P41300mDRAFT_10000416	F016325	MKVNISKVNQGQFVGFINRLKVIDSFVYFKIKNEVVEASAYLPQRDAVKHNRVPLSEIFMIQDGEITTDKDLKIAFFDASRLIDAFKQFDGESIRGEFEFIENESDCVATSFKIYSDELEITLSCSEPSLGYKDLTDAQISSIFNVDGANFDFEFDYSSIAKVKSLFGLDKEETFSIKRKKDGVRLKGKTYNMLVTSSANGDTSGDVTLFKKYLNLLDKEDYTAHVLSNRVVMKSNDSETLLTIATCQSA*
LPjun08P41300mDRAFT_c1000324	LPjun08P41300mDRAFT_10003249	F100407	MTRPYYISATIIPLFYSLIGVIFLFAPEIPSADISPAEKMMKIPLLFTQEIGVLFLIIAIFFRQIFNISRETYLLMNNTFKLALFVLALIAPYLYYYTKAPQLWLFLE*
LPjun08P41300mDRAFT_c1000380	LPjun08P41300mDRAFT_100038010	F031657	MSKNTKKKKKLHFLYHIEDVGFKMLTESEAEAYKSENGDVIWNVHKSIDIEPEWFLRHEFKE*
LPjun08P41300mDRAFT_c1000380	LPjun08P41300mDRAFT_100038011	F044590	MIIKVNDRVEVRPIGSGVLRDGIITNISISTNAELDPAGERGVNVEELDLSNEFPGSICYTDVTFNDEDDETGDLKWAYFSQIKQNE*
LPjun08P41300mDRAFT_c1000380	LPjun08P41300mDRAFT_100038022	F044731	MTFEDIYRKYEHLTVELIENEEIGPLEVAGAMMGQAMKLYKLTLSSEDFDALMTIITHASGLEGDRFTYDDYDSTNETKH*
LPjun08P41300mDRAFT_c1000380	LPjun08P41300mDRAFT_100038024	F039346	MLTSFVITLIECLEIAFITLLISQTKVNKSTITIYASLGLLGGLLSAYFLHDILENYEWLMYAILSSLFLYLFVKNKEVRQHIQQHVDDISQSSSTVLFLTAFFIYGRESFEIFSNLFLNPNASWLAAGLAAFVAVMIYMFARDSKVKVYIFKFGYWAYLVFAIWFGYEALEHLHIL*
LPjun08P41300mDRAFT_c1000660	LPjun08P41300mDRAFT_10006602	F055206	MKFLYVDVEHRKVVALFRNTNEEIIKLNMRDLQILSEKERYVFNSKILPEIDEALYAVSQYTKANVPWWKFW*
LPjun08P41300mDRAFT_c1000757	LPjun08P41300mDRAFT_10007572	F025145	MNILHNPQFNIKKVTAHYTKKDGVPVHYVCTSDLDESDRPFDIYYRKTPHPVHNNYYFGLYTDEEDRMMICKADSIEKYQFGLIAEPDKDEWVYSQCHHDSVEIDSGFIGGGRRYIKRGGDLDTQEFVVRKVKDGEII*
LPjun08P41300mDRAFT_c1001433	LPjun08P41300mDRAFT_10014334	F037947	MRKIGLFSLFNLLAFVVFASFPIETQMLLTEADPEKFKLDTLGFIIGILTCLLLPYSVLLLFIKKKNFRGSLAWGWLAGWVLILLIALLIFIGPEFMFLY*
LPjun08P41300mDRAFT_c1001445	LPjun08P41300mDRAFT_10014456	F040335	MPNKDDPAGHLKKYAWKAGESGNPKGRPLGSKNKVKYTKEAFEEAAGLSPGEMLAQIAARHFAQGTSQGDALCIKAITEANKYLEPTQDAKTAAEDKAEDMSDAELMRRLLDLTEEDEFEVAIVEKDDTATKH*
LPjun08P41300mDRAFT_c1001492	LPjun08P41300mDRAFT_10014924	F023453	MKITDIVSEGNSLLELERWAKSQAPLFEGVASAEKVSNNLLRKAIHKFRKQPESSDEKTKELEDYMAKLEMRLSDEKVEKTILQKFFGFFRKHPKLIGLGVIILMLLSPMLPSIAVIGLSLEKILSMILAGLYAIDIASPAVKTALEL*
LPjun08P41300mDRAFT_c1001542	LPjun08P41300mDRAFT_10015429	F099871	MGSFIKFTFNAFDKTYSVHMKKDIFTESGIGLKNETSKALTKANREFLDKFLKEGIDPYPGWWSESSPTDFYWNTGNNFD*
LPjun08P41300mDRAFT_c1001605	LPjun08P41300mDRAFT_10016051	F029905	MNTQAKASLSDIRTMILFGFPLSTEECGHLYYDGDGLTKNIEEAYVWYRVAQCSGNHKVDSLVNYLDSKLTTSKCLKLSSRAKHIYTRALRH*
LPjun08P41300mDRAFT_c1001768	LPjun08P41300mDRAFT_10017684	F101292	MANVPVKDVKRENPATATVIVPAVKKNAAALNKIELL*
LPjun08P41300mDRAFT_c1002090	LPjun08P41300mDRAFT_10020904	F025151	MGELIRRNPKRTQERLSRLRSIVKPKXPKRRFPSDFXNEEYLEWTSISSDNVDYEVTPLVKGAGRLGELVDWCDDNCSKLYIIGKANKIYFEDENDAAMFALVWK*
LPjun08P41300mDRAFT_c1002097	LPjun08P41300mDRAFT_10020975	F033591	MLFADGIDKNLLPKNILILNGRRKWETLVEFCLKYDINFKMFEVDAGDKFNVSKKLEPYTIFLPSEQYYNPQYYIETLDFVPEYILNCRDDFSGTTLEHTLSIHYNTKTQFDDRALKFFTSKKEQDRVCKLMNIPTLDEGSIDDKIIVKLDKGYGGGTHYEVVDKKDYIPKENDFIQRYIDYDYTCQQHVLVDDDGDYHIYNHSMGKFGDGNVVGNNIAYLYQYPWVDFPEEDIAIVEEFYRKLKDHITVKNRILITEFSKERKTGKLHFQEFNPRPSGEFELGTFDWNIGKFNTLVDLFTNNVEDEIDYYQQRLEIYFDNVYNNRLFGWGTYDGLKIENLPYSRKIKIFNTK*
LPjun08P41300mDRAFT_c1002337	LPjun08P41300mDRAFT_10023376	F085813	MDQIEIIWILVTGIGALNYGLYAYQKGFRRLLKWDVIFLIILNTLMFVPLSLIVGLEFAN
LPjun08P41300mDRAFT_c1002446	LPjun08P41300mDRAFT_10024462	F032446	MSNTEKMKWFATFMFVCAGTLISFNIPESKYAFPLFASGHLIVLGVFLRLKXKPMIFQNAFFLCIDIFGIWQWLLAPIFFV*
LPjun08P41300mDRAFT_c1002964	LPjun08P41300mDRAFT_10029643	F044732	MTEHYFVQVLADNGEVLRWEALDKEQADFIFKQEVAKNGAENCTTGKTAGLNSNWVHRW*
LPjun08P41300mDRAFT_c1003319	LPjun08P41300mDRAFT_10033195	F090619	MISEKYIQIRTKVPINSDGTVFKEFNANEKFRRQDISIMLKLLPLIAKYKLDFLPKIVDYNENGYTYEFVDGKTLKEEIDNGILKLTQKMILEMKIAMDDIWKRFYDISIENKDDELFRGNGFLYHGDPWLGNVIWNDETKELKFIDIDSLSIAEFVPMTQLNNMFFQHLETLLTTQDNNKSTLGTWL*
LPjun08P41300mDRAFT_c1003319	LPjun08P41300mDRAFT_10033199	F059362	MTTKSFYMAGIIKTGEPFLVEDNVKLRKTADIEGNIGKIVRVGTMNDHESVYDIGSLISIDDVSLIIRSFRSGDLVAYDLNGTNSSVYKDIKVTKLLKKQDISVLFQND*
LPjun08P41300mDRAFT_c1003581	LPjun08P41300mDRAFT_10035815	F101330	CGFIGVCIGYFTGHQEICIMIGVGIGILIRIVQSKSK*
LPjun08P41300mDRAFT_c1003872	LPjun08P41300mDRAFT_10038724	F105908	MIFSDSNNGHRVVIDSYKKGDDAYQWCSDNLPLSEWTVVQDENAESFYFEEEQYAQNFLLVFGGRYYKHGG*
LPjun08P41300mDRAFT_c1003912	LPjun08P41300mDRAFT_10039124	F022760	MKIVPITDELLPKLEIFCKEADELGYTNNSSLKAMKYEWCKEQGEYFCAIKDDKIVAVAGCHPLPEVGENAWRILFRGCELPQQDTFKGLGKGDWNSITQREFIPRFIEWCPSNELYLTTNVHHEHSNGKAARNHRLMGLLARQGILDWQSRKLLNGTEQTIWKLNIEEYTKRRNKLKGKYVVQS*
LPjun08P41300mDRAFT_c1004382	LPjun08P41300mDRAFT_10043826	F021319	PIPNRLDIIPAKKLAPAEKTSKRRDTSMGFSSIFLLRNMYDAEEIRISANKILKMSGDISEDTNAPSIVPGTAIKPSFQPSESSIRFCLAYMVVDATELLNTANRLLLTANVGENPANVNTGTIIIPPPRPIIDPNIPAINPSGINQSSSSMLYRY*
LPjun08P41300mDRAFT_c1004677	LPjun08P41300mDRAFT_10046774	F030885	MTMNSITEPSISIIGSTTTDGVALPYTVQMILNDEDNHKKFRKLMSEKFNHKDISIRISKYINEASIHFRNESDVAEFLLLAGE*
LPjun08P41300mDRAFT_c1004804	LPjun08P41300mDRAFT_10048043	F050430	MDKLKENIIDAIKIAGMLFFLMILIGTLVWPGGVETLINLFQ*
LPjun08P41300mDRAFT_c1004985	LPjun08P41300mDRAFT_10049851	F101330	NGSNQSSLMWLQNNYTVSLCGFIGVCIGYFTGHQEICIMIGVGIGIIIRFVQSKSK*
LPjun08P41300mDRAFT_c1005538	LPjun08P41300mDRAFT_10055381	F087322	ALRLGFVLTPLLVLRIIQAGTAEVCFVFLSRRIFLGEDLRAAIVCQARRALFK*
LPjun08P41300mDRAFT_c1005820	LPjun08P41300mDRAFT_10058203	F099440	VQLIKLKNQVLNGVKLIDENGRKIMVCGLHNTEQEKYIENFSQWTCNLLASCIIYVD*
LPjun08P41300mDRAFT_c1006151	LPjun08P41300mDRAFT_10061513	F066858	MNAPSTVPGTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
LPjun08P41300mDRAFT_c1007480	LPjun08P41300mDRAFT_10074801	F025141	GTVLYYMIQCEYCPRGFIETTNGLAEKTFHELLHEPEVVNK*
LPjun08P41300mDRAFT_c1007725	LPjun08P41300mDRAFT_10077253	F045374	MICNDCNSEPFEVIVKEELGLDNEAIELGLEVTHCPFCGANLEWAQRGGYDANEYDNIEDRLDA*
LPjun08P41300mDRAFT_c1008473	LPjun08P41300mDRAFT_10084732	F050430	MDKKLKENLIVGIKIVGMLFFLIVLITTLVWPGGVDTLANLFSAKE*
LPjun08P41300mDRAFT_c1008633	LPjun08P41300mDRAFT_10086335	F101330	CGFIGVCIGYFTGHQEICIMIGVGIGILIRIVQRKTK*
LPjun08P41300mDRAFT_c1008906	LPjun08P41300mDRAFT_10089064	F022760	NNSSLKAMKYEWCKEQGEYFCAIKDDKIVAVAGCHPLPEVGENAWRILFRGCELPQQDTFKGLGKGDWNSITQREFIPRFIEWCPSNELYLTTNVHHEHSNGKAARNHRLMGLLARQGILDWQSRKLLNGTEQTIWKLNIEEYTKRRNKLKGKYVVQS*
LPjun08P41300mDRAFT_c1010331	LPjun08P41300mDRAFT_10103312	F086196	MKKLILLIFVITFNNLSAQHIYKNRKFFGGSFYINNQTLKDVTFGGSNTNSNGDEYWNNTPYDKDQPKDIETNTRMRFDMRYGWFPADMFAIGGDFEITSNSYNEENSLADSAVIWNTFMQNKSRDITIGPFARWYMFEVGGQPYEIGAVFLEGAYQFGIGSSTEEFEFSENDSSFFFHRKEEYGYIMTKATAKLGFSMYXSDFISHNWFTGFLIALEPSIQYDWITRSDMVNYNDFDTEQTGERIRNYNGLKFNISLVSYF*
LPjun08P41300mDRAFT_c1011618	LPjun08P41300mDRAFT_10116182	F078841	MFDDSDVVHSESRSDKAKRAISEYLDEYGQVRATELKKEVCDERGICSEKIFYRCLSELVKSKRIIKNEQNRGNVSYYKPDWGVYENMINIDVIKQGTSTVRILAEVGRHENEVMQLTLLKMAFDNIMGMYASMTLITQQPGKAKTSAIITSTLKNTIPELLEMFSIALEKCGKNRSRILSSLMDYRDGNMGGGWVLENHPDFKK*
LPjun08P41300mDRAFT_c1012458	LPjun08P41300mDRAFT_10124581	F013190	SATCDGSIPLNEMPSTVASKVASSTKVDIAEIIAFHSLEVFVLAENSNLIK*
LPjun08P41300mDRAFT_c1013653	LPjun08P41300mDRAFT_10136532	F066128	IAIIEVSVPEKKAEARIRAKSKTLSQKVDSDSNKLPIFIQ*
LPjun08P41300mDRAFT_c1014100	LPjun08P41300mDRAFT_10141003	F094427	MDLHLLQHPNTANHISSAEYLQVELLMLYGESCDIGEGKHYTSLTKRGYKRLLKDMHHVQQHLKTLKSTYLIDADGDKLVTVGQRYNDHPCAGGALRASH*
LPjun08P41300mDRAFT_c1015879	LPjun08P41300mDRAFT_10158791	F062844	SLCAEAANGKAATPATSAKSRMVFLVMIFDFTDK*
LPjun08P41300mDRAFT_c1017657	LPjun08P41300mDRAFT_10176571	F042029	MNTLYLICSHSCMSQMEVPYLLNNSPMLYGESQAGEHWASYELNGKQVDHEPGELGKIRVHDDYWNISDEDKKWYNYDVRNTMSITEEQLNGLLNLIENKSIAVLLHAQNYRDIWKWSRILPVMMIRTAIDEWDGNIVSWAAREYNYLMEDGSNNNHSGYDHTWPGVDTIVKEYNSKKQYNNDIDDCEGDIILNQSQWSTVEGLNTLWNTVGIDTPDQNWIHQYYEDFQNHQEIETELAKELTDAYNTR*
LPjun08P41300mDRAFT_c1017811	LPjun08P41300mDRAFT_10178112	F037947	MKKIGLFSLLSLFSVIAFASFPVESQMLLTEADPEKFKLDTLGFIIGILTCLLLPYSALLLFIKKKNFRGSLAWGWLAGWVLILLIA
LPjun08P41300mDRAFT_c1020234	LPjun08P41300mDRAFT_10202343	F022907	MADNTLDIQQNVGDIGGDFTKTIVVDSXVEAGGSGSDXEAGVEAIHTIFQXIPELIFVSIYGLAMYAAVLFITRYMRNG*
LPjun08P41300mDRAFT_c1020940	LPjun08P41300mDRAFT_10209402	F074151	MKLKALLKEIFKGIIPALPFGNVIQTISANIKEDGYTPTGAINWPKLMMYGITGLIVLGRLLGVITNEDVMTLIDTLQGLG*
LPjun08P41300mDRAFT_c1023626	LPjun08P41300mDRAFT_10236262	F038863	MYKFYDYKCNNGHVNEHMVKGSPDTFKCKDCDSLATRQLSSPRSSLDPHSGDFAGATIKWAKDHERKRAKAEKANR*
LPjun08P41300mDRAFT_c1024909	LPjun08P41300mDRAFT_10249092	F018452	DVARDVRMWYQITCVYNGGPVGYYKTSTRSETEAQLVQNIKASFKFYQTNLRTGKVHEIDWHHVQMSNKEDYLGFIQGVGYEGDREADTRFGAFCDGAANAYVFEGNWAGTWVTNTALSHSDIQGDTSETKASQPFRVNGFAMDPLGWATKNNKDATNTWIWSPSHHPDRLEDTSENKKDPYPNITSGAADSNYLKATASMDDEDYFQTQADNSYWANNYPLDTA*
LPjun08P41300mDRAFT_c1026759	LPjun08P41300mDRAFT_10267591	F090333	KSSQTRKFLEDLSKFSDIPLDDIKIPTTKGGLKENGAVPLEIMKKYFSQSNINRYIATEENMNMGSIVTEHYTKGKKEPAYYMQAGDDFYRISKKDPFNIGRKIPELSGVGDFKVRVATRSQFYEVQAEMKIKKMPNSLYSLKPDTKKKNPFLKY*
LPjun08P41300mDRAFT_c1026898	LPjun08P41300mDRAFT_10268981	F031535	TDNIIARGPKNTRAYVAIASANQLRGLTNEVNHFQVPFKTFEFSTVNIK*
LPjun08P41300mDRAFT_c1028106	LPjun08P41300mDRAFT_10281061	F105860	ITNLANTVANQHKTGNTVQSNVDGVDTVFKQYDGTEVARIYDGAVVPTVSGTTYTLSAGTGFGFRRRILTLSAGGGNNLTLTAADSGSIIYVTPTEPVDLILPLVGTETGLWFDIIFAAQVNKAFEIKTSGQDGNDNITLMNQYVGPSQNLDVGGSDHDVLYIANANIGTRIEIINCAGGAAEKW
LPjun08P41300mDRAFT_c1028993	LPjun08P41300mDRAFT_10289931	F070217	LLTYLLIISSFSFSQNAAEKDSTIAVQTTSQTVEDTTQAVVDTSQVEPDQIEKISTMVLANRITNVSGFERTIIGDLLGDEMMETSAASMVISENQAKEAMGTNFDPNCFSDSCAIAVGKSFNLSNVITFGIINIKKIADSTDVDTLLAVKDSIITATIIMKNFHIGTGQVVSEMTFPFEGDTEKLLMTARRMVWSAVGVEPPPGRFPEDLIDNKISLKKRILDFYYGTVVPWVQDNTEMTMIIGGILIISGGWLIF
LPjun08P41300mDRAFT_c1029235	LPjun08P41300mDRAFT_10292352	F077773	MFASFFLQKSPENYETETNITKFKSKRKMFIKQQLGLELYSPVTPKLQPEPTCGQLVDNRKA*
LPjun08P41300mDRAFT_c1033272	LPjun08P41300mDRAFT_10332722	F101330	MWLQNNYTVSFCGFIGVCIGYFTGHQEICIMIGVGIGILIRIVQ
LPjun08P41300mDRAFT_c1036380	LPjun08P41300mDRAFT_10363802	F083231	MPSKDGKIFDNIVYIGLGVNGLTALYLLLMYFEII*
LPjun08P41300mDRAFT_c1037920	LPjun08P41300mDRAFT_10379202	F029246	MGSNLGLIGIGLVALFATSMIKFVAIAAIAWGAWKVYQDWGAM*
LPjun08P41300mDRAFT_c1038608	LPjun08P41300mDRAFT_10386082	F023366	INLDVNGASANVSIEQTSTGTVHIDAAGASFTADIDQDNASVISLHHDGASADYVILQTGGSGDILTLTVNGASANVDIIQRD*
LPjun08P41300mDRAFT_c1039876	LPjun08P41300mDRAFT_10398762	F011620	MFDKILQAVLKFFGKKTPEPPTEENNESLEALERIEA
LPjun08P41300mDRAFT_c1042043	LPjun08P41300mDRAFT_10420431	F097662	EKDLKQFKNVENVFIRFSVDGWGKANEWTRQGTVWEENLQVMDQYYKNFRLAVWDITANSLSVRHIPKLITYLWNNYPDAKVQIRPVVNKTEVLMENIPDRFKKESLAFFEKHKNRLEGVDHVINEMRKPFNNDMKRKKTVRHFVDYYDAHGALTLDSFDPELAEWIHSDDEE*
LPjun08P41300mDRAFT_c1042234	LPjun08P41300mDRAFT_10422341	F034336	MKINVKVLSAFLLIVNLYAVENPEDVKPTIQNGKGLFVLLDDTSWICQIVAEAYILGTIDGIITRKRPLRALCGNKVDKALLTIPNGIEIERIISIVHQFLKDNPENLYKPSIALIRQSLLRAFD
LPjun08P41300mDRAFT_c1045753	LPjun08P41300mDRAFT_10457532	F025141	TVQYYMIQCEYCPRGFIETTNGLAEKTFHELLHEPEVVNK*
LPjun08P41300mDRAFT_c1052024	LPjun08P41300mDRAFT_10520242	F052866	MYNSPINIMKKQTFSIRFGIIILLIAFIHAQENRDALVGAWEFKSMTTIHYSEPKQVEIIYSGEKNNETLTFNQDGSFTYKGVSNGELDNDTGSWSTENNQLIIDLINMKTMSKYKILDTVLTIIIHD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300000141: Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P4 1300m

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences