NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LPjun08P12500mDRAFT_c1013001

Scaffold LPjun08P12500mDRAFT_c1013001


Overview

Basic Information
Taxon OID3300000152 Open in IMG/M
Scaffold IDLPjun08P12500mDRAFT_c1013001 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - June 2008 P12 500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1445
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameP12, Pacific Ocean
CoordinatesLat. (o)48.97Long. (o)-130.666667Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006551Metagenome / Metatranscriptome370Y
F064804Metagenome128Y
F089050Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
LPjun08P12500mDRAFT_10130011F089050N/AMVELNHNVISFNSDTLIKGGHGVLVSVFVTKVGTGSNKVEFRNGTTA
LPjun08P12500mDRAFT_10130013F064804N/AMVQLYHNEKLAKARDLVIIFLFGSIVIETITGIELLGAWWK*
LPjun08P12500mDRAFT_10130015F006551N/ANVFLGSHEVYSEIQGLYMPSVRIPNPYGESLVQIDVNGIQSFKGTGVGIHVDSIYGIPFIPSKDAPSSSSDSSEVGRLFAFDTSDAEGYGYPRIGIQIAIPTEYYEATRRSPGYPFVNNAFVEKGVFRTMGETVCRHFRSQGKIRDIKL*
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