Scaffold LPaug08P2610mDRAFT

Basic Information
Taxon OID	3300000159 Open in IMG/M
Scaffold ID	LPaug08P2610mDRAFT_c1000209 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300000159 Open in IMG/M

Scaffold ID

LPaug08P2610mDRAFT_c1000209 Open in IMG/M

Source Dataset Name

Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	14412
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (21.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14412

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (21.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	P26, Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)	10
Location on Map

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Source Dataset Sampling Location

Location Name

P26, Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024647	Metagenome / Metatranscriptome	205	Y
F045049	Metagenome / Metatranscriptome	153	N
F065434	Metagenome / Metatranscriptome	127	Y
F071292	Metagenome / Metatranscriptome	122	N
F084741	Metagenome / Metatranscriptome	112	N
F085783	Metagenome / Metatranscriptome	111	Y
F102062	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
LPaug08P2610mDRAFT_100020912	F085783	AGAAG	MLKWFRTNKMLRKLLSKKTEEADNIRTDWFRQRKEISELERELQLARRMWDELDKTKRY*
LPaug08P2610mDRAFT_100020913	F102062	N/A	MVITKKIKIMKILIWIKRDEAITGNISEYYTYLPFNESFEENNEDIEWVQVQITQDEFARLEDK*
LPaug08P2610mDRAFT_100020914	F071292	GAG	MEIFIVIAFNKADFYPVGVTDNLVLAKQYAQREFKERAKSHRVYVYKKMMNAPQMMEDKIVYKI*
LPaug08P2610mDRAFT_100020924	F065434	N/A	MKELRRNLSEPQIVWLQKIRNQSWLTLEDTEMINSVLYRTDYDETQKTWLNGIRETYLNTQPH*
LPaug08P2610mDRAFT_100020927	F084741	AGTAGG	VREFKPFKTNKMKNYQAILMIIIGFGLSIGTMNGFVQNYIGFAGVDNEIAFSFMGMMFGTLGIFGIDYKQLLNGLK*
LPaug08P2610mDRAFT_100020929	F024647	N/A	MNYLVHPSNIVSRAFGIDSFKQMISDEQIQFSELVDTSVEIAEEWTNDWDEGHGFGSSDGTYLLKDFIDTIISSYTKGYKTVFNPSLSIVKL*
LPaug08P2610mDRAFT_10002095	F045049	N/A	MIKKFKLFWDKFTTRFAVPLLIVSMVWNTYLGWESRTNARAAEYRLKSYILEHRHLPIEENIYTITSVDGEEIEIDESTYGEVDWRWLKENGWEDMIPSPMDNLTPEGISDIYLGKIFNGISNIKSKIVNWYESLFKEEYIKTMRG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold LPaug08P2610mDRAFT_c1000209

Overview

Ecosystem & Geography

Associated Families

Sequences