Scaffold M3P_c10000054

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold M3P_c10000054

Scaffold M3P_c10000054

Overview

Basic Information
Taxon OID	3300000206 Open in IMG/M
Scaffold ID	M3P_c10000054 Open in IMG/M
Source Dataset Name	Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 1, Mississippi Headwaters
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7039
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Source Dataset Sampling Location
Location Name	USA: Solway, Minnesota
Coordinates	Lat. (^o)	47.349634	Long. (^o)	-95.182806	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F002487	Metagenome / Metatranscriptome	554	Y
F063703	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
M3P_1000005412	F002487	N/A	MTREDAIKDLQGEYCCYCANPKRSGSCCGENHFVPFEDLYEEDKEAMIEEYLSKGK*
M3P_1000005413	F063703	GGAG	MQTEQLRRKARQLYNNKLVSQEVNQYNQRKWVRSVLQLGDKWLVAKPIERIQ*
M3P_100000545	F000166	GGA	MANIPTQQDAELFAKSVKKWQQVLSLGDWRIEKGTKPAKQAMASVEFNESARLAVYRLGDFGAEKITPESLDKTALHELLHIFLHDLMVVATDPKSSDEDIEMQEHRVINLLENLIFKDSHGRT*

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