NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold EM350_1003008

Scaffold EM350_1003008


Overview

Basic Information
Taxon OID3300000298 Open in IMG/M
Scaffold IDEM350_1003008 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Cork, Ireland - EM350
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI), Macrogen
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24566
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From University College Cork, Ireland, Of The Elderly Irish Population

Source Dataset Sampling Location
Location NameCork, Ireland
CoordinatesLat. (o)51.907Long. (o)-8.472Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084124Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
EM350_100300813F084124N/ALFGGLNITALAFARATKENTLPFHGQRNALTVFLAFPVTMAIACFNKLSFSAQTTTLFAPEELLYRMIFMGAAQTRKPLKRLDLNFLII*

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