NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ConS_8084CDRAFT_1008065

Scaffold ConS_8084CDRAFT_1008065


Overview

Basic Information
Taxon OID3300000397 Open in IMG/M
Scaffold IDConS_8084CDRAFT_1008065 Open in IMG/M
Source Dataset NameHot spring microbial streamer communities from Conch Spring, Yellowstone National Park, USA - C T=80-84
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)841
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location NameConch Spring, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.5564135Long. (o)-110.8321631Alt. (m)Depth (m)2194.56
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021443Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
ConS_8084CDRAFT_10080651F021443N/AMKCLLNNKKLTFMFESSYVICYNYDYSYYQTNGILSFAVIDLAFKIIKIIKQQKRKSIILKKRKPIIHLLNYIDTLNSNFNGNKFDITFSLRNNKYKTQLIYNLYLYRCLYRRRYYEDYSLKVIERENLCIIRLEHDYDNIIQPKNLNLATMLMHILEKEKIDMIDGNGIIFYCVFLM*
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