Scaffold P_2C_Liq_1_UnCtyDRAFT_1003210

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold P_2C_Liq_1_UnCtyDRAFT_1003210

Scaffold P_2C_Liq_1_UnCtyDRAFT_1003210

Overview

Basic Information
Taxon OID	3300000418 Open in IMG/M
Scaffold ID	P_2C_Liq_1_UnCtyDRAFT_1003210 Open in IMG/M
Source Dataset Name	Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	5288
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental → Environmental Microbial Communities From Fremont, Ca And La Paraguera, Puerto Rico

Source Dataset Sampling Location
Location Name	Eden Landing Ponds, San Francisco, CA, USA
Coordinates	Lat. (^o)	37.569167	Long. (^o)	-122.1019	Alt. (m)		Depth (m)	.13
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096901	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
P_2C_Liq_1_UnCtyDRAFT_10032104	F096901	GAG	MWTLWIVSSVIGSTEPKVTRYAEFETTMSCHIEQGIVEENFTQGEKAFCTDER*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.