NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12547J11936_1001083

Scaffold JGI12547J11936_1001083


Overview

Basic Information
Taxon OID3300000736 Open in IMG/M
Scaffold IDJGI12547J11936_1001083 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7618
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F006846Metagenome / Metatranscriptome363Y
F008814Metagenome / Metatranscriptome327Y
F014017Metagenome / Metatranscriptome266Y
F016396Metagenome / Metatranscriptome247Y
F026561Metagenome / Metatranscriptome197Y
F077310Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
JGI12547J11936_100108312F014017AGGMDKLIEYLDENHRRKIADEIRYLELPPEWRPYEVIRYIVGIIEKKNGQASRQN*
JGI12547J11936_100108318F026561N/AMSNFQKEDGTGMTPPTGAGSASGAVTSREATRKYPKQGIKPRMKIDVNSHGIRRETSLDPKPKKTRPKKV*
JGI12547J11936_10010832F000671GAGGMEKILCYCCNKTKNKLNVRKSILMPINLLMCETCISSKFEPRWVVILAGRQLGSEAVKEFIIKKRYXGNDIIASELLV*
JGI12547J11936_100108321F006846N/AMLTDLVERYLMRPKRLREAIQAVVHDNDELLRIIKEHEQDDTPTNLTWSEGDRWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWAREKEVAKSSLFENQVDFE*
JGI12547J11936_10010833F077310N/AMSMDANSVIIVIIASVLSGIGTAMFNGIKESRREKSRKIEREQDLLKMELKDLEIKLYKLEKDLIEWRDKYYNAIQELIEVKGELENCLVELSHIAHHED*
JGI12547J11936_10010836F016396N/AMQVVRLEMMVELYTQSLTNLLQSQGLQTPTNLDAGKWYKAKLDTLDNE*
JGI12547J11936_10010838F008814N/AMADQLTILEEIIKEIGEELYQKWYNALAIEDRNEESSRAMSVNAGETAFWVVQTFMNKFNSAADELKGE*
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