NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12421J11937_10019815

Scaffold JGI12421J11937_10019815


Overview

Basic Information
Taxon OID3300000756 Open in IMG/M
Scaffold IDJGI12421J11937_10019815 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2488
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003690Metagenome / Metatranscriptome473Y
F007263Metagenome / Metatranscriptome354Y
F029434Metagenome / Metatranscriptome188Y
F045755Metagenome / Metatranscriptome152N
F050376Metagenome / Metatranscriptome145Y
F076101Metagenome / Metatranscriptome118Y
F085708Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
JGI12421J11937_100198151F003690GGAMTISGILLELNDYGLELDSFLGAIYLPWHTILITTALLIAYKIYKRKKNK*
JGI12421J11937_1001981510F045755GAGMSEIAGMWICDNCDTLAIVSVETDTILITQCKCVTNERETNV*
JGI12421J11937_1001981511F076101GGAMYKITLAYDGNAPHWQKDYENEFEAWKDFFAFVDWGFADKFSTVNLYNSEMKCFTKIFYREERKVVEVK*
JGI12421J11937_100198152F085708AGAAGMTTNRLLTTLVQLGIGIPALLMARLVWREIVSDYREWANSH*
JGI12421J11937_100198153F050376AGGMTLEEYKAHVEAQRKASLLKAIATMSEANDKMSSLFNTKEAD*
JGI12421J11937_100198155F029434GAGMKRYTFGVWLDIDAEDENQAVSLFDSVVKNTFVSDSYCFEWKEVADEIAI*
JGI12421J11937_100198159F007263AGGMLDTKYIDETEFYFIKDEIKFHCDESQFVYVCKAHGEQMGCYYCEFDYDTKCECEG*
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