NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JzSedJan11_1002476

Scaffold JzSedJan11_1002476


Overview

Basic Information
Taxon OID3300000866 Open in IMG/M
Scaffold IDJzSedJan11_1002476 Open in IMG/M
Source Dataset NameHot spring sediment from Jinze in Tengchong, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterStanford University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)993
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Springs Sediment → Hot Springs Sediment Microbial Communities From Tengchong, China, Analyzing Pire Metagenomes

Source Dataset Sampling Location
Location NameBaoshan, Yunnan, China
CoordinatesLat. (o)25.44138Long. (o)98.46004Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020112Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
JzSedJan11_10024762F020112N/AIKGELQMISRAFRKCVELVEEMLSRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEEEVKTEKI*
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