Scaffold FwDRAFT

Basic Information
Taxon OID	3300000882 Open in IMG/M
Scaffold ID	FwDRAFT_10005231 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Columbia River
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Maryland
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300000882 Open in IMG/M

Scaffold ID

FwDRAFT_10005231 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Columbia River

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Maryland

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5768
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (62.50%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

5768

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (62.50%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater And Marine → Freshwater And Marine Microbial Communities From The Columbia River, Usa, Of Estuaries And Plumes Across Salinity Gradients

Source Dataset Sampling Location
Location Name	Columbia River freshwater tidal region
Coordinates	Lat. (^o)	46.18	Long. (^o)	-123.18	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River freshwater tidal region

Coordinates

Lat. (^o)

46.18

Long. (^o)

-123.18

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F002546	Metagenome / Metatranscriptome	549	Y
F003582	Metagenome / Metatranscriptome	478	Y
F010248	Metagenome / Metatranscriptome	306	Y
F011938	Metagenome / Metatranscriptome	285	Y
F017101	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
FwDRAFT_1000523110	F000473	AGAAG	MFIDKSQDRLKEHFKYGVNEWTGEPNKPVFYTPEMKKAVHQIKKPSMLLMDIVMYPQFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLLESYGVRCELEGKPSERVL*
FwDRAFT_1000523114	F003582	N/A	MNTYKVKLEVTAEVEAFDESDALDYANDIFGVDDEIKNVKVVSVKEK*
FwDRAFT_1000523116	F002546	N/A	VLGSIATFITGTLAGILIGNSGAKDIMAAQIQNKEVDAKNTQADKKLEAEIDATAARLAAKPDGEMPAEQPVDTDWDKE*
FwDRAFT_100052312	F017101	AGG	MDKRMTVLESIIQDVGTALFQKWFNAMPQDQQSEESIANLNKNATETSYFVVKMFMDRFNAAADELKAQPDEQ*
FwDRAFT_100052314	F010248	GGA	MRKSERIRLLEMEMLRMQFQIEYLNAAIGLLLDKNNLAGPDMDAGKWYNSKLNKDK*
FwDRAFT_100052317	F002060	N/A	MDYTTAIIAISAAILSGAATSFIAGIRDNVKEKNRRHEREQDHLKLDLKDLKIELYKIEKELTEWKDKYYNTIQELISVKAELEDALIRVSHAEHHLDELDTEF*
FwDRAFT_100052318	F000671	GAGG	MEKILCYSCNKSKNKLEAKKSALLPINLLICETCISSKLEPRWVVILAGRSNGSDYVKEFIIKRRYIGNEISASELLV*
FwDRAFT_100052319	F011938	GGAGG	VKEYYDITHVVFIHAEDLHGTVEKLGAYASIVNYNKNGIEYNELMENEDFTIVDEIVFTHIEDSN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold FwDRAFT_10005231

Overview

Ecosystem & Geography

Associated Families

Sequences