Scaffold C687J13239_1007884

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold C687J13239_1007884

Scaffold C687J13239_1007884

Overview

Basic Information
Taxon OID	3300001041 Open in IMG/M
Scaffold ID	C687J13239_1007884 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from Rifle, Colorado, USA - Groundwater D2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2797
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F091086	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
C687J13239_10078847	F091086	GAGG	MQDIINTIKISNNPNEVKKILKPLKIKEVVKIAKGLDICIRGNENKTEIICNIVLEVIKGD*

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