NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12633J13313_101348

Scaffold JGI12633J13313_101348


Overview

Basic Information
Taxon OID3300001098 Open in IMG/M
Scaffold IDJGI12633J13313_101348 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1447
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F089467Metagenome / Metatranscriptome109N
F098797Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
JGI12633J13313_1013482F098797GGAMYGRQNWKRKRNCLRKGLFMDTFAQIHKVSGLNKVAVLFDEDSKAHANHHPPTLDDVQRRAFEIHHEHGAVNGGYTLDEWLEAEHELEGTDGPDSGNDLVH*
JGI12633J13313_1013483F089467GGAGMDSEWAKNLADRKKSELEVKRLQQEKDLNDRKLLDTNADKMWVEVRRAAAACCKELNSSMGSDYIKFEGASYHNSFTLITPEATYTATFSPQTWLLSAQETTYTLVIAEGNTVLWKDAQGNALPSEKVAQNIVGTAFR*
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