Scaffold JGI11785J13272_1001167

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI11785J13272_1001167

Scaffold JGI11785J13272_1001167

Overview

Basic Information
Taxon OID	3300001117 Open in IMG/M
Scaffold ID	JGI11785J13272_1001167 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Deep Pacific Ocean - MP2098
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4672
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	North Pacific Ocean
Coordinates	Lat. (^o)	14.53	Long. (^o)	-118.77	Alt. (m)		Depth (m)	294
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105888	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI11785J13272_10011671	F105888	AGGA	MIWESITIDNLILVYVVGLFALIIISLYALIQSKANKLYTFILIPLALIITSMTWQGIKMLQGMPVYGLPIDEKIEVLYVQNDEPWIYVLLNSIETQRGPVFYKIDWTVENE

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