NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001117

3300001117: Marine microbial communities from the Deep Pacific Ocean - MP2098



Overview

Basic Information
IMG/M Taxon OID3300001117 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0053074 | Gp0053955 | Ga0000764
Sample NameMarine microbial communities from the Deep Pacific Ocean - MP2098
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size71695887
Sequencing Scaffolds29
Novel Protein Genes30
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1
Not Available16
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia → Candidatus Ruthia magnifica1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces scabiei1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P1
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDeep Ocean Microbial Communities From The Global Malaspina Expedition
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorth Pacific Ocean
CoordinatesLat. (o)14.53Long. (o)-118.77Alt. (m)N/ADepth (m)294
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003103Metagenome507Y
F013359Metagenome272Y
F015152Metagenome257Y
F018382Metagenome235Y
F021185Metagenome / Metatranscriptome220Y
F023366Metagenome / Metatranscriptome210N
F025152Metagenome203Y
F028834Metagenome190Y
F037771Metagenome / Metatranscriptome167N
F038406Metagenome / Metatranscriptome166Y
F041431Metagenome160N
F047723Metagenome149Y
F049233Metagenome / Metatranscriptome147N
F057762Metagenome / Metatranscriptome136Y
F065856Metagenome127N
F070936Metagenome / Metatranscriptome122Y
F074036Metagenome / Metatranscriptome120N
F084730Metagenome / Metatranscriptome112Y
F086697Metagenome / Metatranscriptome110N
F087030Metagenome / Metatranscriptome110N
F088704Metagenome / Metatranscriptome109N
F090851Metagenome108N
F101292Metagenome / Metatranscriptome102N
F101350Metagenome102Y
F101850Metagenome102Y
F105497Metagenome100Y
F105888Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI11785J13272_1000476All Organisms → cellular organisms → Bacteria8121Open in IMG/M
JGI11785J13272_1000912All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique5392Open in IMG/M
JGI11785J13272_1001167All Organisms → cellular organisms → Bacteria4672Open in IMG/M
JGI11785J13272_1002363All Organisms → cellular organisms → Bacteria3054Open in IMG/M
JGI11785J13272_1003182Not Available2546Open in IMG/M
JGI11785J13272_1005600Not Available1792Open in IMG/M
JGI11785J13272_1006495All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1626Open in IMG/M
JGI11785J13272_1007006All Organisms → Viruses → Predicted Viral1549Open in IMG/M
JGI11785J13272_1007749Not Available1453Open in IMG/M
JGI11785J13272_1008003All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → sulfur-oxidizing symbionts → Candidatus Ruthia → Candidatus Ruthia magnifica1423Open in IMG/M
JGI11785J13272_1008836All Organisms → Viruses → Predicted Viral1330Open in IMG/M
JGI11785J13272_1008982Not Available1313Open in IMG/M
JGI11785J13272_1010467Not Available1183Open in IMG/M
JGI11785J13272_1011702Not Available1094Open in IMG/M
JGI11785J13272_1012337All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031050Open in IMG/M
JGI11785J13272_1012733Not Available1026Open in IMG/M
JGI11785J13272_1013770Not Available971Open in IMG/M
JGI11785J13272_1017932Not Available802Open in IMG/M
JGI11785J13272_1018605All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces scabiei781Open in IMG/M
JGI11785J13272_1019009Not Available769Open in IMG/M
JGI11785J13272_1020088Not Available740Open in IMG/M
JGI11785J13272_1021053Not Available716Open in IMG/M
JGI11785J13272_1022323Not Available685Open in IMG/M
JGI11785J13272_1023285Not Available664Open in IMG/M
JGI11785J13272_1023477Not Available660Open in IMG/M
JGI11785J13272_1023615All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P656Open in IMG/M
JGI11785J13272_1023985All Organisms → cellular organisms → Bacteria649Open in IMG/M
JGI11785J13272_1028816Not Available567Open in IMG/M
JGI11785J13272_1029392All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon559Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI11785J13272_1000476JGI11785J13272_100047612F101292KNANAVMAHVPAKDVKRVNPATATVIVPAVKKNAAVLNKIELL*
JGI11785J13272_1000912JGI11785J13272_10009127F057762VPQVGLPQIEPVTSAIILNTNPEGAKLLVINEKFLFLKIKITKDKIEIIEKIPKEIQAAGT*
JGI11785J13272_1001167JGI11785J13272_10011671F105888MIWESITIDNLILVYVVGLFALIIISLYALIQSKANKLYTFILIPLALIITSMTWQGIKMLQGMPVYGLPIDEKIEVLYVQNDEPWIYVLLNSIETQRGPVFYKIDWTVENE
JGI11785J13272_1002363JGI11785J13272_10023634F101850MHKFYINSVGFPTTTINEFRNKHCGRGGSTPPPPFTTSGGELGSTSAKGYSFVRY
JGI11785J13272_1003182JGI11785J13272_10031824F086697LMYIDIFEQDLFNKYTKLWYENNLDDTTKSDDEINNEALRLLKYEVLGFNLINGSKEEPIKELKEVVSDSFDEAMFNTKSDTLPLLLKAWKALEEKVLLEDKEKLKVN*
JGI11785J13272_1005600JGI11785J13272_10056006F088704MMSNEDCEIENLKLENQKLGKQIEFLKMMVNAASLKLTEEKKRRQFAEQEVTNIKKEMRKEL*
JGI11785J13272_1006495JGI11785J13272_10064951F074036LETYKQEIFHTSFADDDKRKSLWMAYNMLDKIRGHLQTIMESGKLAQKDLELLNKS*
JGI11785J13272_1007006JGI11785J13272_10070061F049233TETDYQRKVLGDIGEKIVGNYMSRIGRTVEMSTDPFDSEKDMIVNGKPLEVKTQVPYCLEKSFTIRKNQLNKCLNVDYFVIVQAPCEYLNEAAIWKVKKGFTYNTVKLKGGGERLSIPMYQTNVIKKMDIVGEDKDLLRKYSTDYGG*
JGI11785J13272_1007749JGI11785J13272_10077492F065856MMNRDKKGQNNQEIGKTEQSSQGDQFRQPSIYSRHDDVCFLDQADHQNSDN*
JGI11785J13272_1008003JGI11785J13272_10080031F084730NDLHSNCTVAILDTVEPVFAVGYFSYLNRITSGIYIYDLSDRLYGYGAPKGALIF*
JGI11785J13272_1008836JGI11785J13272_10088361F070936EFEGEELSEAWNEKLSIKALGEYRKVYNMMKKTGVDKKFIKSMEKFYDDLVIGGMYTSRGAEEKGIVKIDGKTKYKNANW*
JGI11785J13272_1008982JGI11785J13272_10089821F047723IKAALNVPSANNLLNVLGNLKATKKASAKRLVPKKIAINISLA*
JGI11785J13272_1010467JGI11785J13272_10104672F018382QINIDAAKVNLKPIKRKGGKCSIAGLAITKPKPKKIGTSEAKNVSLRLKIYSH*
JGI11785J13272_1011702JGI11785J13272_10117021F087030MLIVYICASIGGTCDTWVKETHFDDWDSCMRAGYTTSLDLIKEAGPEYVNKSRMYVKFRCREVPIREEKI*
JGI11785J13272_1012337JGI11785J13272_10123371F101350DGSGITISSGAGDVNVITWNAIDPDASQTWTNIDPL*
JGI11785J13272_1012733JGI11785J13272_10127332F038406LNDFISFKKEDINKTVINLPFVCACHLNRKIGACGAITVIAFIVMFLILYAPEISTIGEGIGLDYNLVH*
JGI11785J13272_1013770JGI11785J13272_10137701F101292VIKNANAVMANVPVKDVKRENLVTATVIVTAVKKNAVALNKIELL*
JGI11785J13272_1017932JGI11785J13272_10179322F025152MSNDLYIKXLMRRLIKYLNENQKGKVDEMIQKIMEELS*
JGI11785J13272_1018605JGI11785J13272_10186051F105497NIADEFSRFMKESDPQGYKDLEQKIQLSDFDTKGKKGHAEGGRADFIFGGSAGLKGMWKQMMKSINKGRDKPVTKLFPKLSVRDKEMEKLVVGTPAQKAFRAGETEHKIEGIEILINRLKHDKKILERQAKNKAMGDSGLDFLMKDLEKSFSDVYGPHLKKYTDIDKDILQMENIKKNVIMKDRKLNATGGRIGYSGGGKAGLPAITRGLPQGPGMQGTPVPAGPQPAGTSGGDLLVQNQMQQNPWMGAQKPPMGGQPP
JGI11785J13272_1019009JGI11785J13272_10190091F013359EIQSEMIANGRPSAARIRNAMSNPHTWNALKQVGLIPKQNKILEGNINPQLKIELTGVEDETV*
JGI11785J13272_1020088JGI11785J13272_10200882F090851LYFLLISTIRSLITSKNKISVKNFFFKQILGYFILTPLDNVIRLNIKTRYRFHKK*
JGI11785J13272_1021053JGI11785J13272_10210532F090851LYFLLISTIRSLITSKNKISVKNFFFKQILDYFILTLLDNVIRLNMNAIYRFHKK*
JGI11785J13272_1021922JGI11785J13272_10219221F037771VRTSAPALIIFDGYRGLHEGHATAAGGLEALIGSRVSTYWNYCLKGGDSLRARLDRALEWLEVRRNDITEINVIGLSMGCQVAVRFVNQASTTDASIEFGELVLVAPDPKYRPVGRDAEEIGSGTPSAFDEAEALWGNSGLAGPRFVAGLLDSANRMHRTRIVYCRSDGVAEWN
JGI11785J13272_1022323JGI11785J13272_10223233F021185ADSEASDLSLTGKGKYGLRPDQLKFGNDKQILLTTDSNVESYLLVTEFRRNN*
JGI11785J13272_1023285JGI11785J13272_10232851F086697YENNLDDTTKSDDELNNAALRLLKYDILGFKLINGSKEEPVKELEEFARDIFDKTGLNSKSDNLPLLLKAWKAYEEKVLLEKKKN*
JGI11785J13272_1023477JGI11785J13272_10234772F023366TINLDVDGAXANVSIEQTSSGTVSIDAAGASFTADIDQDNASTLELHHDGASADYVILQTGGSGDIIDLEVNGASANVDIIQRD*
JGI11785J13272_1023615JGI11785J13272_10236151F028834MKEKNKMIKIDIRAKNVAYITIGKWVIYVDDSTGERIIDSWEE*
JGI11785J13272_1023985JGI11785J13272_10239852F041431KMGIYLNQPKAVELKIIYNKRDAAKVKDPSKILKVNRDNVKFGKSKNLDARHREYKEIFGENTNFKIILQINDYEKLVTFENQLKNVFEPFCLRSPSNGVQMEWTEKISFEDAEKTINEEYKKFLSS*
JGI11785J13272_1028816JGI11785J13272_10288161F003103RIERDVVTLAQTPSCDAFLYLSKDAQDGLELLDSAPSGFDFTYCQEWGLTVXDDVIDRVILDLRKKAYPSWEDQLDYIYHNSVEDWKTNIITPIKEKYPKR*
JGI11785J13272_1029392JGI11785J13272_10293922F015152NQVFKTMTELCKHHDPLAVSGVLLAQALRLYKTSLPIEDFDLLIDEILETVKEDVRPFDTPTLN*
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