NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI11785J13272_1008836

Scaffold JGI11785J13272_1008836


Overview

Basic Information
Taxon OID3300001117 Open in IMG/M
Scaffold IDJGI11785J13272_1008836 Open in IMG/M
Source Dataset NameMarine microbial communities from the Deep Pacific Ocean - MP2098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1330
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameNorth Pacific Ocean
CoordinatesLat. (o)14.53Long. (o)-118.77Alt. (m)Depth (m)294
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070936Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
JGI11785J13272_10088361F070936N/AEFEGEELSEAWNEKLSIKALGEYRKVYNMMKKTGVDKKFIKSMEKFYDDLVIGGMYTSRGAEEKGIVKIDGKTKYKNANW*

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