NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI12637J13337_1003504

Scaffold JGI12637J13337_1003504


Overview

Basic Information
Taxon OID3300001137 Open in IMG/M
Scaffold IDJGI12637J13337_1003504 Open in IMG/M
Source Dataset NameForest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1302
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameThunder Bay, Ontario, Canada
CoordinatesLat. (o)49.08Long. (o)-89.38Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018419Metagenome / Metatranscriptome235Y
F056937Metagenome / Metatranscriptome137Y
F064442Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
JGI12637J13337_10035041F056937GAGGMEVRAPKGQYRVIGLDSVDTLTWPSGPLWKDCETF
JGI12637J13337_10035042F064442N/AMPLDQAEKWLDHLGSCSPCYSDFSEFRKSHELRKKRTLLAIAASILVVAGIAGWVLLQRHNETLVAQTAVLDLRNRSLPRGTEANPVEPPLVVSRAAAHWNISLPFGSNDGQYDIRLLAASGELLVSTKADAKLTDGVAVIQISVDLSSRSPGQCVLRLTRNGSQESSYVVELR*
JGI12637J13337_10035043F018419N/AFHHRFNRVLKNEHKRQETIELVASTVDLELIEGALDTEWVGELERAITLKQITNRMDGWTKKVWQARQYGYSWKDISRWLGVSEEQARKKFEYNLEKLRESIVRLLKRKNLRPAV*
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