Scaffold J055_10012891

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold J055_10012891

Scaffold J055_10012891

Overview

Basic Information
Taxon OID	3300001199 Open in IMG/M
Scaffold ID	J055_10012891 Open in IMG/M
Source Dataset Name	Lotic microbial communities from nuclear landfill site in Hanford, Washington, USA - IFRC combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Pacific Northwest National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4516
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Nuclear Landfill Site In Hanford, Washington, Usa

Source Dataset Sampling Location
Location Name	Hanford, Washington, USA
Coordinates	Lat. (^o)	46.371184	Long. (^o)	-119.275414	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060108	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
J055_100128915	F060108	GGA	MELLGRLCAAFGISLILTLALLALYQDDGGQAQPEPATITQASAAPANGTP*

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