NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI20152J14361_10004839

Scaffold JGI20152J14361_10004839


Overview

Basic Information
Taxon OID3300001344 Open in IMG/M
Scaffold IDJGI20152J14361_10004839 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7102
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (21.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024647Metagenome / Metatranscriptome205Y
F040113Metagenome / Metatranscriptome162N
F058912Metagenome / Metatranscriptome134Y
F065434Metagenome / Metatranscriptome127Y
F084741Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
JGI20152J14361_1000483910F084741N/AMKNYQAILMIIIGFGLSIGTMNGFVQNYIGFAGVDNEIAFSFMGMMFGTLGIFAIDYKKLLNGLK*
JGI20152J14361_1000483913F065434N/AMKEKRWDLTKAQIAWLQQIKNQNWLKLEDSEMIGSILYRTDYNEDQKLRLNVLRETYITYKKAELV*
JGI20152J14361_100048397F058912N/AMGLKEKLAKKILEMKLNQATKHMSGVIQKLQQQFDDLISSDREKK*
JGI20152J14361_100048398F024647N/AMNYLVHPSNIVSKAFGIDSFKQMISDEQIQFSELVDTSVEIAEEWTNDWDEGHGFGSSDGTYLLKDFIDTIISSYTKGYKTVFNPSLSIVKL*
JGI20152J14361_100048399F040113N/AMRIGYKKFKEIKEWYGSPDFEIGYDAYFTKGKGITLRFGYWRSIDIDGLKNILPAYCKVTENIVDEDEDCGVLYNYNITDSRIY*
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