Scaffold YBMDRAFT_10296644

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold YBMDRAFT_10296644

Scaffold YBMDRAFT_10296644

Overview

Basic Information
Taxon OID	3300001373 Open in IMG/M
Scaffold ID	YBMDRAFT_10296644 Open in IMG/M
Source Dataset Name	YB-Mouth-sed
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of South Carolina
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1243
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine → Marine And Estuarine Microbial Communities From Columbia River Coastal Margin

Source Dataset Sampling Location
Location Name	Youngs Bay mouth
Coordinates	Lat. (^o)	46.17469	Long. (^o)	-123.84933	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064239	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
YBMDRAFT_102966441	F064239	N/A	EGTGYLRPYLPHRLGQRVSYEGIKETVADYFDIAHAVDPDLAEYRRDLLGIFPRRPESARRTQSGLSAARFIQQNQRMLVDKMAGWIGNSDRRVIGRFLRQLQALCTYEHLVVPENQRNDKLVDLTIVATWHVLDGIHRLSGE*

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