NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Draft_102489

Scaffold Draft_102489


Overview

Basic Information
Taxon OID3300001422 Open in IMG/M
Scaffold IDDraft_102489 Open in IMG/M
Source Dataset NameOil sands microbial communities from Horse River, Alberta, Canada - outcrops
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMcGill University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2334
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Oil-Contaminated → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Source Dataset Sampling Location
Location NameHorse River, Fort McMurray, Alberta, Canada
CoordinatesLat. (o)56.70268Long. (o)-111.398858Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017704Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Draft_1024891F017704GAGGMAVRAQRALMGNHCLVLWEVWLVSPLEMCGQEVSRVRAHRRVSRTSPPWSSVRPEGRDHLVGGSPTRAMVGWPGSWQAVRSGNWPCRSPATNLALGGGANRRAVTCVKPEQASKGKLWTPTRPKIGEGSTVWGSSRQTHLERSTGVRGTARRDRGSRKRGRSVRDGGSGLNDAEGHWSARKSDRVVVPPKPGNSGGGKDPDFWYVFEANEVR*
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