NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24006J15134_10050936

Scaffold JGI24006J15134_10050936


Overview

Basic Information
Taxon OID3300001450 Open in IMG/M
Scaffold IDJGI24006J15134_10050936 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-53
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1692
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.5666Long. (o)-138.6666Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004772Metagenome / Metatranscriptome424N
F012282Metagenome / Metatranscriptome282Y

Sequences

Protein IDFamilyRBSSequence
JGI24006J15134_100509361F012282N/AQKFSRYWNGGLSATDIKFFVITDPDQTYYIQASLSLSAAELAIVKNYNVTVSSTADSGSTVTGQSSYYLDGASGTEAAAAVRVIGRAKYPDEKDSDAYPIVEVWLNHHRDRXVTATASTA
JGI24006J15134_100509363F004772GGAGMTTNIKVAQNVSTDGAIITGFRYVDSGLTLGDEGTGSTPTPSHTRVMAMHVYSTIVGDIIIKGTKQITNKTAAGTALRWRVAALDSQDTYVGDMGVGVFGIVSLAT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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