NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24651J20071_1008958

Scaffold JGI24651J20071_1008958


Overview

Basic Information
Taxon OID3300001729 Open in IMG/M
Scaffold IDJGI24651J20071_1008958 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1026
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-5.7497Long. (o)-170.7411Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042382Metagenome / Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
JGI24651J20071_10089585F042382N/AVSMEVICYKLTEIHKAVQKNSKDIEDLKHQVSMGKGGIKAIFIVGSLIALTLGVLKFYKF
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