Scaffold RCM37_1108032

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold RCM37_1108032

Scaffold RCM37_1108032

Overview

Basic Information
Taxon OID	3300001850 Open in IMG/M
Scaffold ID	RCM37_1108032 Open in IMG/M
Source Dataset Name	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM37, ROCA_DNA234_0.2um_Ob_C_2a
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	763
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton → Marine Plankton Microbial Communities From The Amazon River Plume, Atlantic Ocean

Source Dataset Sampling Location
Location Name	Ábidos, Para, Brazil
Coordinates	Lat. (^o)	-1.919017	Long. (^o)	-55.525717	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020339	Metagenome / Metatranscriptome	224	Y
F053790	Metagenome / Metatranscriptome	140	Y
F062691	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
RCM37_11080321	F053790	GGAGG	MKRYYRCVVCGHILSEEDYASLPDSVGCPECGVSKEDYELVVE*
RCM37_11080322	F020339	GGAG	MSNTTKIAKQIAETNPKLSKAYKYDLALREFDNKVELIGLVDDPTYDIADFRGREMLFPKKWVTLDVLDASTEVTV*
RCM37_11080323	F062691	GGAGG	MSNIKLITFNTQQTIIADIIDEGDIGVKIKNPVQVIAVPPKSANDTGGVGFAPYLAYTEEFDTGITIKQSQVFCITTPVADLLENYRRMFSRIELA

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