Scaffold JGI24146J20443_1000335

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24146J20443_1000335

Scaffold JGI24146J20443_1000335

Overview

Basic Information
Taxon OID	3300001868 Open in IMG/M
Scaffold ID	JGI24146J20443_1000335 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	39490
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (29.73%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.290884	Long. (^o)	-156.788063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029737	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24146J20443_10003354	F029737	AGG	MTEFQFLEELEASQKNFEKLNYIFIRDMHKYIRKSTVYDSIFFKTILNYSVNITLTAEWIKLLKDFNSDKYNNILRFSPDFNHSTGVPGAIKKSVRQQHQR*

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