NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001868

3300001868: Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A



Overview

Basic Information
IMG/M Taxon OID3300001868 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0084162 | Gp0055559 | Ga0016755
Sample NameArctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 11-31A
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size250759903
Sequencing Scaffolds27
Novel Protein Genes29
Associated Families20

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes1
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
Not Available6
All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_19FT_COMBO_42_71
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA0941

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow, Alaska, USA
CoordinatesLat. (o)71.290884Long. (o)-156.788063Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010804Metagenome / Metatranscriptome299Y
F029737Metagenome187Y
F029738Metagenome187Y
F031313Metagenome / Metatranscriptome183Y
F042098Metagenome159Y
F050314Metagenome145Y
F051098Metagenome144Y
F051902Metagenome / Metatranscriptome143Y
F076572Metagenome118Y
F079367Metagenome116Y
F080207Metagenome115Y
F084837Metagenome112Y
F084901Metagenome112N
F087142Metagenome110N
F088556Metagenome109Y
F090156Metagenome108Y
F092955Metagenome107Y
F096256Metagenome105N
F102533Metagenome / Metatranscriptome101Y
F104110Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24146J20443_1000098All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes89064Open in IMG/M
JGI24146J20443_1000335All Organisms → cellular organisms → Bacteria39490Open in IMG/M
JGI24146J20443_1000728All Organisms → cellular organisms → Bacteria23653Open in IMG/M
JGI24146J20443_1001776All Organisms → cellular organisms → Bacteria12796Open in IMG/M
JGI24146J20443_1002261All Organisms → cellular organisms → Bacteria10655Open in IMG/M
JGI24146J20443_1006685All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia4960Open in IMG/M
JGI24146J20443_1009804All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales3799Open in IMG/M
JGI24146J20443_1010778Not Available3542Open in IMG/M
JGI24146J20443_1017662All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum2360Open in IMG/M
JGI24146J20443_1019169All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Fulvivirgaceae → Chryseolinea2199Open in IMG/M
JGI24146J20443_1020912All Organisms → cellular organisms → Bacteria2044Open in IMG/M
JGI24146J20443_1021425All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae1999Open in IMG/M
JGI24146J20443_1023092All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium RBG_19FT_COMBO_42_71876Open in IMG/M
JGI24146J20443_1025380Not Available1710Open in IMG/M
JGI24146J20443_1026381Not Available1645Open in IMG/M
JGI24146J20443_1035217All Organisms → cellular organisms → Bacteria1221Open in IMG/M
JGI24146J20443_1037008All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae1163Open in IMG/M
JGI24146J20443_1041179All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae1040Open in IMG/M
JGI24146J20443_1042782All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium999Open in IMG/M
JGI24146J20443_1046346All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae923Open in IMG/M
JGI24146J20443_1048189All Organisms → cellular organisms → Bacteria886Open in IMG/M
JGI24146J20443_1049755All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae857Open in IMG/M
JGI24146J20443_1064701All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094667Open in IMG/M
JGI24146J20443_1073291All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae594Open in IMG/M
JGI24146J20443_1080684Not Available544Open in IMG/M
JGI24146J20443_1083272Not Available529Open in IMG/M
JGI24146J20443_1088291Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24146J20443_1000082JGI24146J20443_1000082116F088556MPKKEIRHDVATQTEYAKMVGKTPQWVNQQIKAGNLNTLQIKGAVLIKLK*
JGI24146J20443_1000098JGI24146J20443_100009817F076572MKKLLICLFVVFTFIGCTTTSTPTCDQDYTFRMEFTNGSNDPYDLYINDKFQQIMGAKSKVTYDIPAGYWSAEVVQRSGYTTYQIDNVYSNTYESCTEYYIVF*
JGI24146J20443_1000335JGI24146J20443_10003354F029737MTEFQFLEELEASQKNFEKLNYIFIRDMHKYIRKSTVYDSIFFKTILNYSVNITLTAEWIKLLKDFNSDKYNNILRFSPDFNHSTGVPGAIKKSVRQQHQR*
JGI24146J20443_1000728JGI24146J20443_100072817F050314MSDMTHLVRPDLHVALDCPVDWTVMELDEQTGLRASDPTDPRIALQVTYDESGSALDEVSERRRNGLPEDTLCEPGTLRKGRVDADRRASPDGPPVKALAFSARDGSFVYRVLIAEDTGHRWTVRLETLQRKEWWQESRTLETILASLLLL*
JGI24146J20443_1001776JGI24146J20443_100177613F029737MTEFQFLEELEASQKSFEKLNYIFIRDLHKYIRKSTVYDSTFFKTILNFSANITLTAEWIKLLKYFNSDKYNNILRFSPDFNHPTGVPDAIKKSVRQQHQR*
JGI24146J20443_1002261JGI24146J20443_10022614F029738MTYKNDPRMITAKFSSSCSKCGCTIKKGTSIYYWPSDRKAYCEKCGEGPYRQFRSVAADEDMMNGTGPCAY*
JGI24146J20443_1006685JGI24146J20443_10066853F096256MTSRKLLAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIGLGTGQTVFGRIDEKWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*
JGI24146J20443_1009804JGI24146J20443_10098044F029738MSQYKNDPRMITAKFSSSCSICKTKLLKGTSIYYWSSSREVFCTKCGEGPYRQFLSSAADEDVYNGCGNPYAY*
JGI24146J20443_1010778JGI24146J20443_10107786F084901METQRNTYYTTDRREQYKRRAFEADLLKLVIAVVAELVIFFIWFDGPARERYEILVHIALPICILLPILNYRYLIVVPFIAFLPDVARAIGIDISHSLVILPLVFLAAFLPFIRRPKTALIAGYAAFAIYASHLIIDTRKYAIIENVGGYLWNNMVLYALLLTLIGFLLVQLLRFSDTNKMAEEL*
JGI24146J20443_1017662JGI24146J20443_10176623F090156MRTTNEMMSDNEQPLELSAELRGEVSALFAPMDRSLAGSVTAAIGMRRSRRRLLQGLWLGFSPVMAVAIVAVLYVGGAVLPRTLSLATSKRAAFAPNAEIRAQDTGPNGLVGSENFPTFATACRAPSFRVVLEGDVARRQLLVTWLRGRHADVALELATAVPGRDVALTLEPDEVQGFVALMVLHGFTGQEPSGLRIVARRSPTSWASSLGTSSLFICLIP*
JGI24146J20443_1019169JGI24146J20443_10191692F042098MKKLIYLFIMVVLSVLRTSAQETGKAQEYKVPAAYRFDYKVVYEINNEEKKAPETANYYFTKNGDYMSMETADSQKEKDMNFMIRTKDGMMITFGEESVPKNPDKNRKVLKVMDMHSMMKGSGEAMAALAKNMPGKEKADAEKKKPNEMDNFVKTGKTKQVFGYTAEEYSKEITKEENGKVHSGTMSVWYAKVDFDPEMMFSLGMGNLAGGQSQSKMHPNNMIGLGMTQKNYLMVEMDYAEKGGKSGTGMKVVGIEKTNFSKSTEGYYVKNYAGMSMKEMMQKESEEK*
JGI24146J20443_1020912JGI24146J20443_10209121F087142MTEFQFLENLEFYQRRFEKHHHKFIVDLNFYIRNNRVHDGVFYNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSPDFNNSTGVPGAKINPTGSGNNE*
JGI24146J20443_1021425JGI24146J20443_10214253F087142MTEFQFLENLEFYQRRFEKHHHKFIRDLNLYIRNNRVHDSVFYNTVLNYSLNITLLASWIKLLKDFNSDKYNNILRFSTEFNNSTGVPGAKINPTSSGNNE*
JGI24146J20443_1023092JGI24146J20443_10230921F084837CRIPMPYNGPAIWGGCVTRREHRAGSWYFSQKTVTVQGGYGALFAVMVQILLSAGAIAVQF*
JGI24146J20443_1025380JGI24146J20443_10253801F080207MRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWEGTLTEAQLDWIHSYGYGEVFF
JGI24146J20443_1026381JGI24146J20443_10263813F096256VRMASRKLESMLVTAMIATVLVSGCLSSLPLGSXPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENNSYGRYFELMKKRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPXLXALFFGYDXTAXSWVVATAASGATIITQXTTALS*
JGI24146J20443_1033235JGI24146J20443_10332352F104110MYLGKDVTTEDSMELGKVSDVSISSSGEVYYLVEKGEDPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
JGI24146J20443_1035217JGI24146J20443_10352173F102533MTIMKSLIKKKEGKVNAKAAQCCAKTSKIIVGCHD*
JGI24146J20443_1037008JGI24146J20443_10370083F087142MTEYQFLENLEFYQRRFENHHHKFIRDLNFYIRNNRVHDSVFFNTVLNFSLNITLTATWIKLLKDFNSDKYTNILRFSPDFNNLNGVPGANINPKGNGNNK*
JGI24146J20443_1041179JGI24146J20443_10411791F087142MTEFQFLENLEFYQHRFEKLHQRIVGDMSLYIRKNHVHDSVFFKTILQFSVNITLTAAWIKLLKDFNADKYSKVLRFSPEFNSINGVPGAKINPSGNGNNK*
JGI24146J20443_1042782JGI24146J20443_10427821F031313GRKVSCHDEIVLVASKKQGTSASARQPKDAVPGDETVWVPRYLINGSEFTSIDFGAGYKSVLGWRKALN*
JGI24146J20443_1046346JGI24146J20443_10463462F087142MTEFQFLENLEFYQRRFEKHHHKFIVDLNFYIRNNRVHDGVFYNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSTDFNNLNGVPGANINPRGSGNNE*
JGI24146J20443_1048189JGI24146J20443_10481891F010804RWSAKVKGTAMQINDAFFLPGDDPSGWTITSFVNDDDNNNLGSFTTVTLHGTKPGQLDFDYLISLSKNENDILISLGRTNNTDKDVDIDDMDYFISRDVRLGSTCDRWISLGTQSRNRDLYELLSVINLITPKTYAVNHVVKDNDTGNSLLMGHVTTIKGASRFDGRTGWKGKTPDRMQVRGYCSYKVTMPPGKSFPGEKLLICFNHDALRAMEHQADLIAIAHDVRLKERRSINIDDMELVANNYSRFHGWMSGGNNTSATTFFRENGLFDFYWGLGGPGRSGSMAVYGSGGST
JGI24146J20443_1049755JGI24146J20443_10497552F087142MTEFQFLENLDFYRRRFEKHHHKFIRDLNFYIRNNRVHDGVFYNTVLNFSLNITLTATWIKLLKDFNSDKYNNILRFSPDFNNLNGVPGAKINPTGSGKKE*
JGI24146J20443_1064701JGI24146J20443_10647012F051902MTNRVFRMISRFFEGTGTSVSTPSGDARGHVRPYEAKTLTRGR
JGI24146J20443_1073291JGI24146J20443_10732911F087142RRFEKHHYKFIRDLNLYIRINRVHDSVFFNTVLNYSLNITLTASWIKLLKDFNSDKYNNILRFSTDFNNLNGVPDAKINPTGSGNHE*
JGI24146J20443_1080684JGI24146J20443_10806841F051098MILTPVYSCRNCKKTYSGSKQEIANVPIEKLVSAARYTLGSPDHIFRIGGKTIQLSDLHQCNANEIGLANFIKIQIG
JGI24146J20443_1083272JGI24146J20443_10832722F092955MKKLLFSLLAFLGFLFPLLAQVDHDYNANDREPVRSTLITKDQVPPEVVKAVQTKFDLNNSATWSKFPYALKEYGWVYDVGASDIALDRYEVTMKTKKGDEL
JGI24146J20443_1088291JGI24146J20443_10882911F079367MATNLDKAGAKIIKVLRGDVADDKFQHKDDIAWWMRRFEALCTTEADAVVRKAMAKLNQAVALRDEGINLVEQLDRDISEAESEITRLGGAAFIEKSEPMIEELKVYYDNLYESLKRSRPEKVEK*
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