Scaffold GOS2246_10007199

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold GOS2246_10007199

Scaffold GOS2246_10007199

Overview

Basic Information
Taxon OID	3300001974 Open in IMG/M
Scaffold ID	GOS2246_10007199 Open in IMG/M
Source Dataset Name	Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	J. Craig Venter Institute (JCVI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1772
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Global Ocean Sampling (Gos)

Source Dataset Sampling Location
Location Name	Upwelling, Fernandina Island, Equador
Coordinates	Lat. (^o)	-0.3011111	Long. (^o)	-91.651665	Alt. (m)		Depth (m)	12
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047114	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
GOS2246_100071992	F047114	AGGA	MPTTWIKADLTWSAAAYTWSDFSVATELLYMVEEGGRSGKYKRDKWGRVIDGPYADFFKDPEKKRKVIELIMKVKSNKIKQKVEIPMDTKIALSDIDMVIQEVLQKPTVNIHVS*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.