Scaffold JC3A454_101264

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JC3A454_101264

Scaffold JC3A454_101264

Overview

Basic Information
Taxon OID	3300001988 Open in IMG/M
Scaffold ID	JC3A454_101264 Open in IMG/M
Source Dataset Name	Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP4 Joseph's Coat Springs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	1531
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, WY
Coordinates	Lat. (^o)	44.733519	Long. (^o)	-110.333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
JC3A454_1012642	F051572	N/A	MGRGPFADVRTFADVVLEGGCKKSLQFLKARLDLCVLAALVKAVPAGSMVKLRPGLVWRLAEELAAAAGRDRERVRNALLKRAGEVMARLRRELGDKAPAEALLARLAELFLEELEA*
JC3A454_1012643	F038745	N/A	MDRAAVACGELMQVSLALSAYYPLCSGGPPCAFAESVERLVRRAASARGAEELVEVMGGRIRLEGLGLPAPALEALAEGLGPEPRWLDALAASFFRLYLGLHKRRRVDGRDLALALCLWAQKRRREDPGNPLWRAAELEPDRLYTEEEAREALGVEEALFRRLWRRALAFHRGEKAYGFQLILAALSLMAAPPRSV*

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