NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24738J21930_10085328

Scaffold JGI24738J21930_10085328


Overview

Basic Information
Taxon OID3300002075 Open in IMG/M
Scaffold IDJGI24738J21930_10085328 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)664
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056484Metagenome / Metatranscriptome137Y
F090926Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
JGI24738J21930_100853281F056484N/AVPEGRDVPTHVILPCRIYQATKHVDSLTLALLFAASFIVPLQVIAQETSASPFEEAGIGWLSAIPIQITAGVDMGYDDNATLTPSPEGSLFVGENVVLTYNRASGQTQFYGLGIGRFDQYFDVNRNDVNGNVTMSLTHKFSTRLSFYASVFAAYQTAPNFQSNVGPENVVSDHFYTTDIFSLT
JGI24738J21930_100853282F090926N/ARTETINLRPTIRGHPTKPKYVQDGDVIYIGRSWF*
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