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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002091 Open in IMG/M |
| Scaffold ID | JGI24028J26656_1001534 Open in IMG/M |
| Source Dataset Name | Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5048 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (11.11%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005) | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brandenburg, Germany | |||||||
| Coordinates | Lat. (o) | 53.1666 | Long. (o) | 13.0333 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042796 | Metagenome | 157 | Y |
| F064499 | Metagenome | 128 | Y |
| F073261 | Metagenome / Metatranscriptome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24028J26656_10015342 | F073261 | N/A | MPRKTAYQLGMEAVLNNPQTSFLHNPKTFHEIHKQSGMSISAMMRHIGGKKKGPKPPTDDEKIKARLDGMEEANKK* |
| JGI24028J26656_10015345 | F064499 | GAG | MTEAHVINVKERTDRWAKIQEMWKDQPIILNRRDAIKINGTDIPDAYHAVFLKHREMLTTASKLGEKHILIMEDDAAPCKDFARHWLAIKEYLDARDDWELFNGGMLMIRDCVDKIVRIDHKDNKDPTMVLGVWRGAMAHFLYMKVEPCLKKMADWEAEGKQMFDGWYSHKMKTFASIPYLAYQCDGYSDAAGEHRSWEERFTFEEDMMRYALREFMTPATAKPQFDHADPRQTLLRERDRTSYGFAPPTESEWKVVAK* |
| JGI24028J26656_10015347 | F042796 | N/A | MDETDFVEVMPSEKKPRDARIEKMDAQFLPQLPATILILGQCGSGKSSALWSMMSKGYVTGKTKKKSIFDEALIYIGTLDAKPSFEKMPIENKLIMTEFEPVSFDEYQTDLKKHQLERLEKGKPMMNTAIIFDDFAGASLMRKAKVGSAPPIEKLCLTSRHESNCTLFYLTQFYKNTGFTSPAVRANITTIILYKMPVNEVRKIAEEYAEQYDIDEFIGHYDRAMARRPYNFLVWDRRRPMNADRWTEGFTSPLPPSKKLTAMNKLMGRRESVSSGSSSDPD* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |