NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24712J26585_10064796

Scaffold JGI24712J26585_10064796


Overview

Basic Information
Taxon OID3300002168 Open in IMG/M
Scaffold IDJGI24712J26585_10064796 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 3 DNA2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1433
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065813Metagenome / Metatranscriptome127N
F073596Metagenome / Metatranscriptome120N
F095525Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
JGI24712J26585_100647962F095525AGGMKALTDIGLVALGLVAGVVVGQLLQYHQKRIENFINKLKKK*
JGI24712J26585_100647963F073596N/AMNVFEKIKLWFTSISKVVNFLINTYKDAEVLADKKANFKTWADFVIAFIKDALQYADEIAALAQSQPVQTKGQVIKAVKQDNKISANYKTAYFKEKAKNFNK*
JGI24712J26585_100647964F065813N/AMIPLISFFGWFDIIIATPFLLYFGYRGVKWIIGKLKKQPQEGEIETPDVES*
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