NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KVWGV2_10335712

Scaffold KVWGV2_10335712


Overview

Basic Information
Taxon OID3300002242 Open in IMG/M
Scaffold IDKVWGV2_10335712 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3140
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameKolumbo Volcano, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)494
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053225Metagenome141Y
F054784Metagenome139Y
F088736Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
KVWGV2_103357122F088736AGGAMTDTNKVPNTPENETKVRQAVAQFMVERVLTKDEIMEFAMDHLEQTFEDAGHTIADLAVMVKQTEIPKARPDGPSQPSRMLCYGTIPGYTGDGPEYYFFDKEQDYDYSACEVKGVR*
KVWGV2_103357124F054784AGGAGMKLENLGKNQTRLIMQVQDHTENFTWDKDIYFSYGTPVLVVNYRDAVIHETAEKYSVTTSKHLNAFKRMCNRYDERGGPMTFEHGREWATYLAPESRMRVVAEEC*
KVWGV2_103357128F053225AGGAGMRKFTQSIIGKGVTFTKLAKVRDTRGKVDFERIDIEGIVTENDGYVCTVRGWDGVMHTNVETAEVRAWQEADRNIEDELSCLV*
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