NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24751J29686_10002221

Scaffold JGI24751J29686_10002221


Overview

Basic Information
Taxon OID3300002459 Open in IMG/M
Scaffold IDJGI24751J29686_10002221 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3934
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030468Metagenome / Metatranscriptome185Y
F054834Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
JGI24751J29686_100022211F030468GGAGGMSTKAGTLGFSERPALFTFWTVAVSTLAASALILSAVALNVAGRDAQPVTSVEGSGTHEASIGATLWDAGKLEAMKGRVLAESARIQDYAPLWDAGKLEAMRGRVLAESVRIQDYAPLWDADKLEAMRGRVLA
JGI24751J29686_100022214F054834N/AHHRPVCSEAAGRRTFRRAIAWSAALCALGLGCVAALVGALDTRRVCVGIIEAMCDGPNWGEALVAFGLACTLLTIGVVLVVRLRREA*
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