NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24187J35170_1011594

Scaffold JGI24187J35170_1011594


Overview

Basic Information
Taxon OID3300002491 Open in IMG/M
Scaffold IDJGI24187J35170_1011594 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant BLVA 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2558
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F004024Metagenome / Metatranscriptome456N

Sequences

Protein IDFamilyRBSSequence
JGI24187J35170_10115942F002372AGGGGGMPTRREDRLWATVHQRSMHLRALLDGLDMVDVDVTYELDYYPYAIVDLLLLRVDAPPLVLRSAYVHANRQWEYHSEWALRIIDAALLLVEEYRADPSAAGAVGV*
JGI24187J35170_10115943F002795GGAGGMMATSGLTLCGMVASYREFASRRDGRTYRVITVFGDLVLDGVILCQVDGYDVFVDSPGYTRGEMVELPARLQFVRDSSGRPAVRLYVDEGVR*
JGI24187J35170_10115944F002229GGAGGMVTLLTVDGVEEIDYLPSDAEIRTSLDDCALYGILLHGVTWIRLSSGAGWWTIIGGRRVVATLGWCWFTDDGRGYWSPTLASVSSEACAMLGVEVEVDDGD*
JGI24187J35170_10115946F004024GAGGVQSERDYVRQSPSLGDDDMMFLDARATLAAALARAVVGYSDNRVRALAWLAVATPRLYDRIAPIVESSAIRQSPGASRTLRDALRALSLEEYMRRRDERRSER*
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