Scaffold JGI25133J35611_10004373

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25133J35611_10004373

Scaffold JGI25133J35611_10004373

Overview

Basic Information
Taxon OID	3300002514 Open in IMG/M
Scaffold ID	JGI25133J35611_10004373 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_85
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6878
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (76.19%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)	85
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F053225	Metagenome	141	Y
F054784	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25133J35611_100043732	F054784	AGGAG	MKLEPXGKNQTRVITQLKDAKENFTWDKDIYFSYGVPVLIINYRDAEIHETAEKYSSTTSKHLNSFKRMSNRYDDRGGPIDTAVLHGREWQVFLAPESRMHTVAGQC*
JGI25133J35611_100043735	F053225	AGGA	MRKFTQSILGKGVTFTKLCKVRDARGRVDYARKDIDGIVTENDGYLCTVRGWDGTMHTNVETTELVTWAEADEPTQDMPCLD*

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