Scaffold JGI25164J39214_1020589

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25164J39214_1020589

Scaffold JGI25164J39214_1020589

Overview

Basic Information
Taxon OID	3300002772 Open in IMG/M
Scaffold ID	JGI25164J39214_1020589 Open in IMG/M
Source Dataset Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	583
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter lanceolatus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location
Location Name	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058198	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25164J39214_10205891	F058198	AGGAGG	MTELMLVTLVLVALAVRTFVVRHRIASWECLWRFRSGPCTVELRRHAGLARLGGDSCEYPQPREFRVMSLRVGGIPLWSQQAIVSLPTDADSRIGAIDASEYDHLFDRHFRMTWPRHAKATRRL

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