Sample 3300002772

Basic Information
IMG/M Taxon OID	3300002772 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0053073 \| Gp0061151 \| Ga0007031
Sample Name	Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002772 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0053073 | Gp0061151 | Ga0007031

Sample Name

Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	80006623
Sequencing Scaffolds	24
Novel Protein Genes	25
Associated Families	25

Dataset Contents

Total Genome Size

80006623

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1
Not Available	10
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. KK5	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter lanceolatus	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. KK5

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter lanceolatus

Ecosystem Assignment (GOLD)
Name	Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Ecosystem Assignment (GOLD)

Name

Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Plant → Plant rhizosphere

Location Information
Location	University of North Carolina, USA
Coordinates	Lat. (^o)	35.9082	Long. (^o)	-79.0499	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

University of North Carolina, USA

Coordinates

Lat. (^o)

35.9082

Long. (^o)

-79.0499

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F023377	Metagenome / Metatranscriptome	210	Y
F023612	Metagenome / Metatranscriptome	209	Y
F024826	Metagenome / Metatranscriptome	204	Y
F031516	Metagenome / Metatranscriptome	182	Y
F034241	Metagenome / Metatranscriptome	175	Y
F035339	Metagenome / Metatranscriptome	172	Y
F036775	Metagenome / Metatranscriptome	169	Y
F036776	Metagenome / Metatranscriptome	169	Y
F037289	Metagenome / Metatranscriptome	168	Y
F040130	Metagenome / Metatranscriptome	162	Y
F040711	Metagenome / Metatranscriptome	161	Y
F044583	Metagenome / Metatranscriptome	154	Y
F044585	Metagenome / Metatranscriptome	154	Y
F047761	Metagenome / Metatranscriptome	149	Y
F049682	Metagenome / Metatranscriptome	146	Y
F051255	Metagenome / Metatranscriptome	144	Y
F056275	Metagenome / Metatranscriptome	137	Y
F058198	Metagenome / Metatranscriptome	135	Y
F060114	Metagenome / Metatranscriptome	133	Y
F062899	Metagenome / Metatranscriptome	130	Y
F076251	Metagenome / Metatranscriptome	118	Y
F092337	Metagenome / Metatranscriptome	107	Y
F099381	Metagenome / Metatranscriptome	103	Y
F099462	Metagenome	103	Y
F101290	Metagenome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI25164J39214_1001841	All Organisms → cellular organisms → Bacteria	4024	Open in IMG/M
JGI25164J39214_1002712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2549	Open in IMG/M
JGI25164J39214_1004638	All Organisms → cellular organisms → Bacteria	1564	Open in IMG/M
JGI25164J39214_1005006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1468	Open in IMG/M
JGI25164J39214_1005486	Not Available	1375	Open in IMG/M
JGI25164J39214_1005512	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
JGI25164J39214_1005761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. KK5	1328	Open in IMG/M
JGI25164J39214_1006051	Not Available	1284	Open in IMG/M
JGI25164J39214_1006192	All Organisms → cellular organisms → Bacteria → Proteobacteria	1266	Open in IMG/M
JGI25164J39214_1006557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1216	Open in IMG/M
JGI25164J39214_1006634	Not Available	1207	Open in IMG/M
JGI25164J39214_1006661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1203	Open in IMG/M
JGI25164J39214_1006776	Not Available	1187	Open in IMG/M
JGI25164J39214_1008248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1044	Open in IMG/M
JGI25164J39214_1008287	Not Available	1041	Open in IMG/M
JGI25164J39214_1008740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1005	Open in IMG/M
JGI25164J39214_1008896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	995	Open in IMG/M
JGI25164J39214_1008961	Not Available	990	Open in IMG/M
JGI25164J39214_1011112	Not Available	865	Open in IMG/M
JGI25164J39214_1016127	Not Available	682	Open in IMG/M
JGI25164J39214_1016280	Not Available	678	Open in IMG/M
JGI25164J39214_1020589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → Curvibacter lanceolatus	583	Open in IMG/M
JGI25164J39214_1020741	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
JGI25164J39214_1024909	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25164J39214_1001841	JGI25164J39214_10018415	F040711	MPSDSSRDRLASALGRDADHVVMERGFSLAFVGIHGQVRLVQFRLSKKGFDADPAVDNQVFATMLDEFTAVVDRLLRERWGGLAMRAAFDGEGELIERLYETGTLERCDAVDPVSPAGKLVKDGETVDARELLIRASARLVENWGVFERAPVLDDGAFAHEARVRTWVMGATG*
JGI25164J39214_1002712	JGI25164J39214_10027122	F024826	MADATPYFGIAPFVLGMTRELARAAAGKPDSVETTRDDEGASVETWFYDGGQIELEFDPAPDAKLESITAWSDKTTVNGVAIIGCELGELQRLARQADIHDLALTDDFADSGQCWQSEQHGLMFWAAKGKIVNMTIFPRFDDSGQEPQWPE*
JGI25164J39214_1004428	JGI25164J39214_10044282	F099381	MSEDFKPGTRPLLRLAGLDAVRAFVSRAEEAHVIWTAVMAFMLRLYQEPDGKARRESGPTDSQVVTALRAVLQENFGSEPADYVAWCLVRYGCRQKPTMSALHPWEGLLFEWQQRKASTPRIALMLRDAGFERPLTPQALEALDGWITDPVSALGAATDIIEALFGERLVSYNLHDDGSTPSHDVLFGGLVASLMPHAKLALLRQSLVRQDEGAVWRVEYTYEGRERHFDVKAEGSTMDVDGVMQGVDDLLESIGRHERTYRLAPGRYNNGETGTFVVVDGQRFPEIAWRLRLP
JGI25164J39214_1004638	JGI25164J39214_10046383	F049682	MDQREFEAVVDEFGADLQDLVELVETARYEQATAVEISRLLDAREDLLVLVNKLPALRSAEAPATANVPLASLRTRIAHAREALKSSHDSREILQMVAETGEAFAGFVAPLQAAGRWPKGRSR*
JGI25164J39214_1005006	JGI25164J39214_10050061	F034241	MSQANPRQYIGALRAAVSAAKAVNKARAAAYHLLPDGISCKMDWKGWSDPFYNATPRQQALLDVLQDLLDGGETELPMIALKTALRLEIRESEILRSRDNLCADGETGYFFDDVLHGLYLLDTQETEQVFYGLIDRLVQPESVRAGPIDR*
JGI25164J39214_1005486	JGI25164J39214_10054861	F047761	MDVLTRLAALIIALLLAIDAFSGERTETLRVDGHSRAPRWQRDDDYRLHFIGGRVESCGVGLAAWNALRDGDDVAVDTSRVFKTCDGVRRGDEVLARANLPKWLLVLPIALLLAAGFGWIQFERRVRSDRRWWFG*
JGI25164J39214_1005512	JGI25164J39214_10055122	F036775	MYDQLDQMPDIQEIEDRPGQGRRRGLSDVAFYVACCALALLPASLAAVLLHRTIGEPFLFLAAVVLSTWVITTVALVKIAGPLLRCRAIVAAGGLVSVAMCSLFL
JGI25164J39214_1005761	JGI25164J39214_10057612	F056275	MDWHCIKFDRRGAHEAEAADLVLALEDAYGSAGEPAAAEVFMAHGRVGDYAFYLSPEASRMAPSVLQRFHAVLCEPPVDLHRCTPMIL*
JGI25164J39214_1006051	JGI25164J39214_10060511	F044583	MDQLLTPNQEILRNRIRFALRRATGFVFDIDAMLRKPELRAKRIGLWRDVADHELSSLLDQLETEFQVDAADEEEAERTVVLHRPEAGTAHR*
JGI25164J39214_1006192	JGI25164J39214_10061922	F035339	LASTPITLKQLRADRVLIWCWLPLGGFAMWMVVKAWMALAGAPPQGLYMALDIGWIAVTFSLIARRSTARCPRCNHRWLRAFPWMSLSKVECGVCGHEMPEG*
JGI25164J39214_1006557	JGI25164J39214_10065573	F076251	MNTFVPESPPRSPFWRVLQLIAGVALFLYALRLLSPMPDDRAGFILLVAILAAGSMALTDSIVGVLLAALDKMQKKGNE*
JGI25164J39214_1006634	JGI25164J39214_10066342	F037289	MSAWLSNQSVSWSVVAQASWRAMHLRAASLVAPSTLRRAQTQVVRLITVVAGH*
JGI25164J39214_1006661	JGI25164J39214_10066612	F023377	MTRRPVCLPRALRMAMAATLLLAAAGVQAMTVQYQCTGRRLLTAELTPRKGQLHFEGKDWTVVRVPDKNMARYISKKDEIEVITKDRAMTFTHGTETLQCLLYSDALPGDAPRTLPKN*
JGI25164J39214_1006776	JGI25164J39214_10067762	F036776	MNAIVRVLAVYTGLSLLLCAFTRLEWSPLQPNGFGQWVALFLLIFPAAAAAEFLGERLFGQGTPTKAEESMTHSDCSWGRIITGVGVLLVTFGVVLGAAWWLSHPAASI*
JGI25164J39214_1008248	JGI25164J39214_10082482	F051255	MYAAAAIAPVTQQAAHDWARRQAARTMVRAAMNSNAVIYRRTWPTLEAIETLGEAEYDPTLKFDGFMDSTLDLRDGLSVVEVFAPISDDEALQEFALLRAHR*
JGI25164J39214_1008287	JGI25164J39214_10082873	F092337	VTTMRATDSAMCTLRTATFTISIRDSSDDQLEAAAAAFTSTLHRAGMTPEDALLAWRRMDEWEDLNFAADADPGTQWWRTMAIARDAVLAALRAAGLDGQRRPFVIEAADAPH*
JGI25164J39214_1008740	JGI25164J39214_10087401	F023612	MKPSLSTAHRARSGRQAAALAILAATTLGAQAEGLVLRAYENPASARIAPEYALTNSHIPASSIRVFGDYWFFDPTTQANLGPTMGSIASGFRASTGVVGLAQPLSLFDTRPDPLQSLPYIGLGYSHLWFKSALSLNADLGLASQTHGRGLLTSPSSLDDVTSQLRWAPVMAVNVRYSF*
JGI25164J39214_1008896	JGI25164J39214_10088962	F060114	MTSPLTDLFEQQRIENARLSGQIVALEMAVKLLFMQHPNPNALAGFYSKAIDGLLDITLATRMPEEMRDALDQARNGLLEALRQQPTLGG*
JGI25164J39214_1008961	JGI25164J39214_10089613	F062899	MNSLAANRTVARPLPAAARAAKLCSFVEDLNWPVPRQTPDRKPVRQTEVWVPGPNGQWEGVMPTLQ*
JGI25164J39214_1011112	JGI25164J39214_10111122	F044585	MTPADIDHQALTALRLLPDEPERAMRVWDDAFARATAAGLDRTLLRLRIVKMHHQARFGDRHALGQKMLAATAEARAHGWRVESLLVDLLEVFLATLSANHADGMGDVEGIRAEAEAYLDPIELSWMELMAGHFRGYMLGWALEPERTYRALNRLISSPDSPPGLVANVQMNIGHSHLLVGNVDLAATYLQQAWRGYDALPLTPRKLAAARAWSQCLMAMNEYRRADTV
JGI25164J39214_1016127	JGI25164J39214_10161272	F031516	MLHFDTAQMSAITQAHFFSRVAEFIRDQTTVPAYRQAAQDTSLRTALWAPHWPTLREASEHDAALFMCFLLACATLGVDATRASEAVRQSSQPETSMKLFLSERGLLRFSAFDVPHLTRPGTEA*
JGI25164J39214_1016280	JGI25164J39214_10162801	F101290	MTLRSTLLVLAVTATLGGTALAAELPAASSDSPEADASLYGQSVTLPRQATACSERIADYLPRFQKAYDAWRTDNAARIASGNKFIHEQAAKGGVNADEGMNKLADADVERLRKTSPELLARHCQLMLDSLAAPAAN*
JGI25164J39214_1020589	JGI25164J39214_10205891	F058198	MTELMLVTLVLVALAVRTFVVRHRIASWECLWRFRSGPCTVELRRHAGLARLGGDSCEYPQPREFRVMSLRVGGIPLWSQQAIVSLPTDADSRIGAIDASEYDHLFDRHFRMTWPRHAKATRRL
JGI25164J39214_1020741	JGI25164J39214_10207412	F040130	GSFKRAVAVVAGVVLGMAIAAGTGPWRELFKPSQPVQPAPIQRERAPDLRV*
JGI25164J39214_1024909	JGI25164J39214_10249092	F099462	MGADTQTTYLEYVITIAETGGRFTARVSRPGFLIEHDGRSSEIWAAASCGSLDRAIQTAKAAIDNDHIR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002772: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences