NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J40625_100064610

Scaffold B570J40625_100064610


Overview

Basic Information
Taxon OID3300002835 Open in IMG/M
Scaffold IDB570J40625_100064610 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4948
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039944Metagenome162Y
F046179Metagenome151Y
F056323Metagenome137Y
F072111Metagenome121N

Sequences

Protein IDFamilyRBSSequence
B570J40625_10006461012F072111GGAGGMKKQMVLALAIFGHLFLFLFVDSSFEGSSKWKMWAFYGSSLLSVAVWAAYVIHEDDNPKGGAA*
B570J40625_10006461014F056323N/AMIRLFSLQEMADDLKLPPAVVALWAADGYIPHVMREGMPLFDPVAVGRHIAKQLNELNKIDDGNTTDTTTN*
B570J40625_1000646104F039944GGAGGMIRDLSLALALLVLLGFAVAITSGVLGGPSDLEMRVRASEPVNL*
B570J40625_1000646109F046179GGAGGMSRPQWENNALLAIMRDGVAIEDAQFVLECIQKAAERIDHHEDHEMFPLLMEYHANDKAALCNLDAETFADVLACLGHDLMRLEHLWTLKHLDPPTDDVDWSLE*
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