Scaffold JGI25617J43924_10024706

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25617J43924_10024706

Scaffold JGI25617J43924_10024706

Overview

Basic Information
Taxon OID	3300002914 Open in IMG/M
Scaffold ID	JGI25617J43924_10024706 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2104
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Laytonville, California, USA
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031940	Metagenome / Metatranscriptome	181	Y
F050294	Metagenome	145	Y
F083762	Metagenome	112	Y
F103947	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100247061	F050294	N/A	EHGDKMKHVPALYLATAMALQGMTKHELEALKLRIEEKATIP*
JGI25617J43924_100247062	F083762	N/A	MSAKRTNGRWVVYEXRNGEFIRLSRLFTTRAQAEKERDKLEAMFTYKRVSLGVGVVKG*
JGI25617J43924_100247063	F031940	GGAG	MRLPFCILNVLGDMLDDGELHFVEAAQSLDAARARVQALSEVWPGEYVIYDAATGERVSITAGGEEA*
JGI25617J43924_100247066	F103947	N/A	MNQNKPYSPPRLTAYDPKNVPEWLNLMQQGLLKGANVPPTYTAVVDRDRKFVHVSESFCELVGYEIEDLIGTRYDLLTAPNTTDIPTAHRLFFKLGYMHGLWMFVHRTGYRILIRYEAWLRPDTNIQ

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