NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_102107

Scaffold Water_102107


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_102107 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3516
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018831Metagenome / Metatranscriptome233Y
F018932Metagenome / Metatranscriptome232Y
F031501Metagenome / Metatranscriptome182N
F050306Metagenome145N
F077316Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Water_1021071F031501GAGMTSELLDLFEEAKRIIDKQEQLIKLQQSLIKTMQQGLQGVELNELLLKKQLADLQEELMTVTNDYIDVMGGGEKV*
Water_10210712F050306AGAAGMSKYYEIKKREDVTVKNMLEIYGKSSKYRKKITWDAFYLITGWTHIQITKDERQK*
Water_1021075F018831N/AMKIIASVSIEVRVDDTELLDDAKERAIDELIDSLEDWINNNGIPPIISIEYKLPEIDENQQFLN*
Water_1021077F018932N/ALSNNRATRHQEIWKRTKNGLELVLPKKIKTDIGFQLMFGHREDYRVEEKRIEDNANRYQAKTYLSIEDFKQHI*
Water_1021079F077316GAGMKKQSNDTNKRLMSWINNRLFKTLNPKDWEIESILYIYNNEKDSNIRGRSEQGKHSSRRNS*
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