Scaffold JGI24721J44947

Basic Information
Taxon OID	3300002966 Open in IMG/M
Scaffold ID	JGI24721J44947_10001626 Open in IMG/M
Source Dataset Name	Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002966 Open in IMG/M

Scaffold ID

JGI24721J44947_10001626 Open in IMG/M

Source Dataset Name

Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32053
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32053

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.611006	Long. (^o)	-110.440182	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.611006

Long. (^o)

-110.440182

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24721J44947_1000162617	F092976	GGAGG	MMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWVDIAWDAESDHEFLLVECRSGHLFRVDEEFWLFDCDDYSDAGVYVPSED*
JGI24721J44947_1000162620	F088087	GAGG	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEKFINGGDE*
JGI24721J44947_1000162621	F080678	GGAGG	MFVKKVDAKTTPIAEVYDDWERIWMGEKEIRRFLAYTGLSALPYNLRVEHFLKCPFLHGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFSQGR*
JGI24721J44947_1000162623	F100012	AGGAGG	MDREKVLQALREAQAEYNIEDLDRFIKQAWEEVDIIDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFVAVHPETGQCLTFLKDPVYSWESRISFSARIKSADDAVDAVMSLAELIEQNLKSRAE*
JGI24721J44947_1000162624	F069506	GGAGG	MQLTHTEEQIKQAIEATWQELLQEADAEDYSLEEYLEHYRKYWDDPDFPNDIPEIIIRAVDKLIGKPLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIVRLVIKLLDQIQSALADA*
JGI24721J44947_1000162625	F086364	AGGAGG	MEREKIVAALEEAFAEISGAEYEDEPITFAEFLESFEKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVGVVFPILSIDDVVQVVEYFLRLVQQA*
JGI24721J44947_1000162628	F104114	AGGAGG	MERLRLWRSMTQDERFTAAEKELKDAIVARYDEFADEWSLSRSVEDASPRTLAEIIIQTVENLLGLQWQLEWDYDTDADDMVWSSGATAYWFKVSDPETGYVLTHKTSGVTGERLRYFKLIETFGDAAQAVVDLADIIAEKLLVVRSQVQSLKEVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24721J44947_10001626

Overview

Ecosystem & Geography

Associated Families

Sequences