Metagenome Family F088087

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088087
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	62 residues
Representative Sequence	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDE
Number of Associated Samples	31
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	91.74 %
% of genes near scaffold ends (potentially truncated)	11.93 %
% of genes from short scaffolds (< 2000 bps)	62.39 %
Associated GOLD sequencing projects	23
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (84.404 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment (42.202 % of family members)
Environment Ontology (ENVO)	Unclassified (52.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.872 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.63% β-sheet: 39.68% Coil/Unstructured: 39.68%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02223	Thymidylate_kin	6.42
PF01402	RHH_1	3.67
PF13155	Toprim_2	1.83
PF05876	GpA_ATPase	0.92
PF03796	DnaB_C	0.92
PF13662	Toprim_4	0.92
PF04255	DUF433	0.92
PF13479	AAA_24	0.92
PF02195	ParBc	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0125	Thymidylate kinase	Nucleotide transport and metabolism [F]	6.42
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.92
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.92
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.92
COG5525	Phage terminase, large subunit GpA	Mobilome: prophages, transposons [X]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.40 %
All Organisms	root	All Organisms	15.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.40 %
cellular organisms	root	All Organisms → cellular organisms	15.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	84.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	15.60 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002966\|JGI24721J44947_10001626	All Organisms → cellular organisms → Bacteria	32053	Open in IMG/M
3300003598\|JGI26465J51735_1002756	Not Available	5268	Open in IMG/M
3300003605\|JGI26463J51803_1010786	Not Available	2020	Open in IMG/M
3300003605\|JGI26463J51803_1013561	Not Available	1654	Open in IMG/M
3300003606\|JGI26462J51802_1010796	Not Available	1854	Open in IMG/M
3300003606\|JGI26462J51802_1024136	Not Available	907	Open in IMG/M
3300004089\|Ga0066183_1034229	Not Available	625	Open in IMG/M
3300005225\|Ga0073353_1058668	All Organisms → cellular organisms → Bacteria	11782	Open in IMG/M
3300005225\|Ga0073353_1067420	Not Available	4847	Open in IMG/M
3300005275\|Ga0065719_114791	Not Available	1656	Open in IMG/M
3300005275\|Ga0065719_141453	Not Available	504	Open in IMG/M
3300005852\|Ga0079998_109173	All Organisms → cellular organisms → Bacteria	15800	Open in IMG/M
3300005853\|Ga0079997_116987	All Organisms → cellular organisms → Bacteria	133099	Open in IMG/M
3300005855\|Ga0079992_114865	Not Available	896	Open in IMG/M
3300005855\|Ga0079992_119625	Not Available	1429	Open in IMG/M
3300005855\|Ga0079992_126766	All Organisms → cellular organisms → Bacteria	5831	Open in IMG/M
3300005857\|Ga0080007_1038355	All Organisms → cellular organisms → Bacteria	22950	Open in IMG/M
3300005857\|Ga0080007_1086054	Not Available	1169	Open in IMG/M
3300005858\|Ga0079995_1037119	Not Available	590	Open in IMG/M
3300005858\|Ga0079995_1044107	All Organisms → cellular organisms → Bacteria	5432	Open in IMG/M
3300005858\|Ga0079995_1099650	Not Available	514	Open in IMG/M
3300005860\|Ga0080004_1144126	All Organisms → cellular organisms → Bacteria	25037	Open in IMG/M
3300005966\|Ga0081478_148440	Not Available	2451	Open in IMG/M
3300006065\|Ga0081425_130494	Not Available	2476	Open in IMG/M
3300006065\|Ga0081425_134151	Not Available	5264	Open in IMG/M
3300009591\|Ga0105155_1054502	Not Available	671	Open in IMG/M
3300009596\|Ga0105156_1003976	Not Available	2162	Open in IMG/M
3300019289\|Ga0187840_10001573	Not Available	3099	Open in IMG/M
3300019289\|Ga0187840_10039318	Not Available	672	Open in IMG/M
3300019289\|Ga0187840_10048012	Not Available	615	Open in IMG/M
3300020145\|Ga0197144_119159	Not Available	706	Open in IMG/M
3300022545\|Ga0212125_1010106	Not Available	3538	Open in IMG/M
3300022545\|Ga0212125_1017423	Not Available	2313	Open in IMG/M
3300025345\|Ga0209669_101891	All Organisms → cellular organisms → Bacteria	7691	Open in IMG/M
3300025373\|Ga0209143_1000973	All Organisms → cellular organisms → Bacteria	13594	Open in IMG/M
3300025373\|Ga0209143_1000976	All Organisms → cellular organisms → Bacteria	13575	Open in IMG/M
3300025373\|Ga0209143_1002214	All Organisms → cellular organisms → Bacteria	8500	Open in IMG/M
3300025440\|Ga0209741_1000657	All Organisms → cellular organisms → Bacteria	9335	Open in IMG/M
3300025546\|Ga0209225_1051352	Not Available	1216	Open in IMG/M
3300027863\|Ga0207433_10001920	All Organisms → cellular organisms → Bacteria	43587	Open in IMG/M
3300028675\|Ga0272445_1002622	All Organisms → cellular organisms → Bacteria	12166	Open in IMG/M
3300028675\|Ga0272445_1006234	Not Available	6031	Open in IMG/M
3300028675\|Ga0272445_1009189	Not Available	4443	Open in IMG/M
3300028675\|Ga0272445_1016911	Not Available	2744	Open in IMG/M
3300028675\|Ga0272445_1019309	Not Available	2466	Open in IMG/M
3300028675\|Ga0272445_1024858	Not Available	2020	Open in IMG/M
3300028675\|Ga0272445_1030816	Not Available	1696	Open in IMG/M
3300028675\|Ga0272445_1036836	Not Available	1465	Open in IMG/M
3300028675\|Ga0272445_1037765	Not Available	1435	Open in IMG/M
3300028675\|Ga0272445_1041834	Not Available	1316	Open in IMG/M
3300028675\|Ga0272445_1055509	Not Available	1038	Open in IMG/M
3300028675\|Ga0272445_1058252	Not Available	996	Open in IMG/M
3300028675\|Ga0272445_1065413	Not Available	903	Open in IMG/M
3300028675\|Ga0272445_1067870	Not Available	876	Open in IMG/M
3300028675\|Ga0272445_1072410	Not Available	828	Open in IMG/M
3300028675\|Ga0272445_1084729	Not Available	723	Open in IMG/M
3300028675\|Ga0272445_1085324	Not Available	719	Open in IMG/M
3300028675\|Ga0272445_1122402	Not Available	528	Open in IMG/M
3300028675\|Ga0272445_1127756	Not Available	509	Open in IMG/M
3300029977\|Ga0272449_1011168	All Organisms → cellular organisms → Bacteria	6030	Open in IMG/M
3300029977\|Ga0272449_1014543	All Organisms → cellular organisms → Bacteria	5011	Open in IMG/M
3300029977\|Ga0272449_1019897	Not Available	3981	Open in IMG/M
3300029977\|Ga0272449_1037106	Not Available	2465	Open in IMG/M
3300029977\|Ga0272449_1043616	Not Available	2158	Open in IMG/M
3300029977\|Ga0272449_1045084	Not Available	2104	Open in IMG/M
3300029977\|Ga0272449_1049053	Not Available	1964	Open in IMG/M
3300029977\|Ga0272449_1054142	Not Available	1812	Open in IMG/M
3300029977\|Ga0272449_1060002	Not Available	1664	Open in IMG/M
3300029977\|Ga0272449_1061280	Not Available	1636	Open in IMG/M
3300029977\|Ga0272449_1068217	Not Available	1495	Open in IMG/M
3300029977\|Ga0272449_1082399	Not Available	1272	Open in IMG/M
3300029977\|Ga0272449_1082569	Not Available	1269	Open in IMG/M
3300029977\|Ga0272449_1082996	Not Available	1263	Open in IMG/M
3300029977\|Ga0272449_1109858	Not Available	988	Open in IMG/M
3300029977\|Ga0272449_1115263	Not Available	947	Open in IMG/M
3300029977\|Ga0272449_1122131	Not Available	898	Open in IMG/M
3300029977\|Ga0272449_1123585	Not Available	888	Open in IMG/M
3300029977\|Ga0272449_1124800	Not Available	881	Open in IMG/M
3300029977\|Ga0272449_1127160	Not Available	866	Open in IMG/M
3300029977\|Ga0272449_1132999	Not Available	832	Open in IMG/M
3300029977\|Ga0272449_1146572	Not Available	761	Open in IMG/M
3300029977\|Ga0272449_1149403	Not Available	748	Open in IMG/M
3300029977\|Ga0272449_1172404	Not Available	657	Open in IMG/M
3300029977\|Ga0272449_1215714	Not Available	535	Open in IMG/M
3300029977\|Ga0272449_1218030	Not Available	530	Open in IMG/M
3300033490\|Ga0326760_1004691	Not Available	4703	Open in IMG/M
3300033490\|Ga0326760_1021075	Not Available	1652	Open in IMG/M
3300033491\|Ga0326762_1017392	Not Available	858	Open in IMG/M
3300033893\|Ga0326768_053271	Not Available	503	Open in IMG/M
3300034696\|Ga0370516_003713	Not Available	6695	Open in IMG/M
3300034696\|Ga0370516_019376	Not Available	2625	Open in IMG/M
3300034696\|Ga0370516_019623	Not Available	2607	Open in IMG/M
3300034696\|Ga0370516_029514	Not Available	2039	Open in IMG/M
3300034696\|Ga0370516_036425	Not Available	1792	Open in IMG/M
3300034696\|Ga0370516_039727	Not Available	1697	Open in IMG/M
3300034696\|Ga0370516_040864	Not Available	1666	Open in IMG/M
3300034696\|Ga0370516_055122	Not Available	1378	Open in IMG/M
3300034696\|Ga0370516_065998	Not Available	1231	Open in IMG/M
3300034696\|Ga0370516_084149	Not Available	1053	Open in IMG/M
3300034696\|Ga0370516_090383	Not Available	1006	Open in IMG/M
3300034696\|Ga0370516_116975	Not Available	850	Open in IMG/M
3300034696\|Ga0370516_118053	Not Available	845	Open in IMG/M
3300034696\|Ga0370516_133085	Not Available	780	Open in IMG/M
3300034696\|Ga0370516_169225	Not Available	665	Open in IMG/M
3300034696\|Ga0370516_174791	Not Available	651	Open in IMG/M
3300034696\|Ga0370516_213521	Not Available	571	Open in IMG/M
3300034696\|Ga0370516_233680	Not Available	538	Open in IMG/M
3300034696\|Ga0370516_253147	Not Available	510	Open in IMG/M
3300034696\|Ga0370516_260360	Not Available	500	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Thermal Springs	Environmental → Aquatic → Thermal Springs	85.32%
Freshwater	Environmental → Aquatic → Freshwater	12.84%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.83%

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	77.06%
Lotic	Environmental → Aquatic → Freshwater → Lotic	12.84%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	3.67%
Near-Boiling (>90C)	Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C)	3.67%
Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline	1.83%
Unclassified	Environmental → Aquatic → Thermal Springs → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	46.79%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	30.28%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	12.84%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	3.67%
Alkaline	Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline	3.67%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	42.20%
Hot Spring Water	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water	18.35%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	12.84%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	3.67%
Hotspring	Environmental → Aquatic → Thermal Springs → Near-Boiling (>90C) → Alkaline → Hotspring	3.67%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring	2.75%
Hot Spring Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat	2.75%
Thermal Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring	2.75%
Hot Spring And Microbial Mat Streamer	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat Streamer	2.75%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring	2.75%
Hot Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring	1.83%
Sulfidic Aquatic	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Unclassified → Sulfidic Aquatic	1.83%
Hot Spring And Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring And Microbial Mat	0.92%
Hot Spring	Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002966	Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01	Environmental	Open in IMG/M
3300003598	Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG	Environmental	Open in IMG/M
3300003605	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C)	Environmental	Open in IMG/M
3300003606	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG	Environmental	Open in IMG/M
3300004089	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (version 2)	Environmental	Open in IMG/M
3300005225	Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, bulk metagenomes as controls for mini-metagenomic methods	Environmental	Open in IMG/M
3300005275	Hot spring sediment microbial communities from Great Boiling Spring, Nevada - Cellulolytic enrichment CS 85C	Environmental	Open in IMG/M
3300005852	Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPADES assembly)	Environmental	Open in IMG/M
3300005853	Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG (SPADES assembly)	Environmental	Open in IMG/M
3300005855	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPADES assembly)	Environmental	Open in IMG/M
3300005857	Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPADES assembly)	Environmental	Open in IMG/M
3300005858	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls C (FF_Mn_C) (SPADES assembly)	Environmental	Open in IMG/M
3300005860	Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPADES assembly)	Environmental	Open in IMG/M
3300005966	Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - T=80-84	Environmental	Open in IMG/M
3300006065	Hotspring Microbial Communities from Lower Geyser Basin, Spring Unknown 43 (Mound Spring), Yellowstone National Park, Wyoming, USA ? Sample 3, Mini-Metagenomics	Environmental	Open in IMG/M
3300009591	Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316	Environmental	Open in IMG/M
3300009596	Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWTFFsm_matched	Environmental	Open in IMG/M
3300019289	Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_HostDNA	Environmental	Open in IMG/M
3300020145	Sediment microbial communities from Great Boiling Springs, Gerlach, Nevada, United States - GBS 85_MetaG	Environmental	Open in IMG/M
3300022545	SSW_combined assebmly	Environmental	Open in IMG/M
3300025345	Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)	Environmental	Open in IMG/M
3300025373	Freshwater microbial communities from Yellowstone National Park, Wyoming, USA - Fairy Falls B (FF_Mn_B) MetaG (SPAdes)	Environmental	Open in IMG/M
3300025440	Hot spring and microbial mat streamer communities from Octopus Spring Streamers, Yellowstone National Park, USA - OCT_B (SPAdes)	Environmental	Open in IMG/M
3300025546	Sulfidic aquatic microbial communities from Washburn Spring, Yellowstone National Park, USA - WS (SPAdes)	Environmental	Open in IMG/M
3300027863	Hot spring thermophilic microbial communities from Obsidian Pool, Yellowstone National Park, USA - OP-RAMG-01 (SPAdes)	Environmental	Open in IMG/M
3300028675	Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1	Environmental	Open in IMG/M
3300029977	Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-024-1	Environmental	Open in IMG/M
3300033490	Hot spring sediment microbial communities from Geyser Creek Basin, Yellowstone National Park, WY, United States - GCR.EP_S	Environmental	Open in IMG/M
3300033491	Hot spring sediment microbial communities from Norris Geyser Basin, Yellowstone National Park, WY, United States - NOR.PS_S	Environmental	Open in IMG/M
3300033893	Hot spring sediment microbial communities from Norris-Mammoth Corridor, Yellowstone National Park, WY, United States - NMC.RSW_S	Environmental	Open in IMG/M
3300034696	Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24721J44947_1000162620	3300002966	Hot Spring	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEKFINGGDE*
JGI26465J51735_100275610	3300003598	Thermal Spring	MKASDGSVWTPVTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE*
JGI26463J51803_10107865	3300003605	Freshwater	MKASDGSVWLPVTVSSAPCEICKRKSKSVVYECVEGKWVGVRVVACPEHAEKAIEQFIAGGDE*
JGI26463J51803_10135615	3300003605	Freshwater	MLKASDGSLWTPVTVSSAPCEICKRKSKSVVYECVEGKWAGVRVVACPEHAE
JGI26462J51802_10107964	3300003606	Freshwater	MLKASDGSLWTPVTVSSAPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEQFIAGGDA*
JGI26462J51802_10241363	3300003606	Freshwater	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE*
Ga0066183_10342292	3300004089	Freshwater	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEQFIAGGDE*
Ga0073353_105866815	3300005225	Hotspring	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDE*
Ga0073353_10674204	3300005225	Hotspring	MKASDGSVWLPVTVSSAPCEICKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEQFIAGGEE*
Ga0065719_1147912	3300005275	Hot Spring	MMMLEVTDGSVWREVGVSKSSCEICGRKGSARIYECVEGKWVGVRVVACPEHRERAIEKFISGGEE*
Ga0065719_1414532	3300005275	Hot Spring	VIKASDSSVWRSVGVSSSSCEICRKKGRAQIYECVEGKWAGVRVVACPEHAQKAVEVFIAGGEE*
Ga0079998_10917313	3300005852	Thermal Spring	VLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE*
Ga0079997_11698772	3300005853	Hot Spring	LKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE*
Ga0079992_1148652	3300005855	Freshwater	MKASDGSVWLPVTVSSATCEICRRKSKSVVYECVEGKWAGVRVVACPEHAERAIEQFIAGGEELCL*
Ga0079992_1196253	3300005855	Freshwater	VMKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEQFIAGGDE*
Ga0079992_1267669	3300005855	Freshwater	MKASDGSVWTPVTVSSAPCEICKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDE*
Ga0080007_103835521	3300005857	Hot Spring And Microbial Mat Streamer	MKASDGSVWLPVTVSSAPCEIYRRKSKSVVYECTEGKWVGVRVVACPEHAEKAIEKFINGGDE*
Ga0080007_10860542	3300005857	Hot Spring And Microbial Mat Streamer	VLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE*
Ga0079995_10371191	3300005858	Freshwater	MKASDGSVWTPVTVSSAPCEICKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFI
Ga0079995_104410710	3300005858	Freshwater	MKASDGSVWLPVTESSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFIAGGDA*
Ga0079995_10996501	3300005858	Freshwater	PVTASSASCEICRRKSKSVVYECVEGKWAGVRIVACPEHAEKTIEKFINGGDE*
Ga0080004_114412627	3300005860	Sulfidic Aquatic	MKKVSDGSVWTPVTVSSAPCEICGRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGDE*
Ga0081478_1484407	3300005966	Hot Spring And Microbial Mat	VLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFTAGGDE*
Ga0081425_1304942	3300006065	Hotspring	MLKASDGSVWMPVTVSSAPCEICRRKSKSVVYECVEGKWAGVRVVACPEHAEQVIEQFIAGGEE*
Ga0081425_1341515	3300006065	Hotspring	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAGKAIEQFIAGGDE*
Ga0105155_10545022	3300009591	Hot Spring	MMMMLKVTDGSVWKEVGVSKSSCEICGRKGSARIYECVEGKWAGVRVVACPEHAQKAVEVFIAGGEE*
Ga0105156_10039765	3300009596	Hot Spring	MQSAMLRASDGSVWRAIGVSQSGCEICRRKAAAIYECVEGKWAGVRVVACPEHAQDAIEKFIAGGEE*
Ga0187840_100015736	3300019289	Hot Spring Microbial Mat	MLKAGDSSVWTPVTVSSAPCEICRRKSRSVVYECTEGKWAGVRVVACPEHAERAIEQFIAGGEERCS
Ga0187840_100393181	3300019289	Hot Spring Microbial Mat	PVTVSSAPCEICKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0187840_100480122	3300019289	Hot Spring Microbial Mat	VLKASDGSVWLPVTVSSASCEVCKQKSRSVVYECTEGKWAGVRVVACPEHAKKAIEKFINGGDE
Ga0197144_1191592	3300020145	Sediment	MMMLEVTDGSVWKEVGVSKSSCEICGRKGSARIYECVEGKWAGVRVVACPEHKEQAIEKFICGGEE
Ga0212125_10101066	3300022545	Hot Spring	MQSAMLRASDGSVWRAIGVSQSGCEICRRKAAAIYECVEGKWAGVRVVACPEHAQDAIEKFIAGGEE
Ga0212125_10174235	3300022545	Hot Spring	MWKASDGSVWKEVGASTSSCEICRRKDSARIYECIQGKWAGVRVVACPEHKEQAIEKFIYGGEE
Ga0209669_10189110	3300025345	Thermal Spring	MKASDGSVWTPVTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0209143_100097319	3300025373	Freshwater	MKASDGSVWTPVTVSSAPCEICKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDE
Ga0209143_10009768	3300025373	Freshwater	MKASDGSVWLPVTVSSAPCEICKRKSKSVVYECVEGKWVGVRVVACPEHAEKAIEQFIAGGDE
Ga0209143_10022142	3300025373	Freshwater	MKASDGSVWLPVTESSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFIAGGDA
Ga0209741_100065715	3300025440	Hot Spring And Microbial Mat Streamer	MKASDGSVWLPVTVSSAPCEIYRRKSKSVVYECTEGKWVGVRVVACPEHAEKAIEKFINGGDE
Ga0209225_10513521	3300025546	Sulfidic Aquatic	MKKVSDGSVWTPVTVSSAPCEICGRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0207433_1000192043	3300027863	Hot Spring	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272445_100262215	3300028675	Sediment	MLTASDGSVWTPVTVSSAPCEICKRKCKSVVYECVEGKWAGVRVVACPEHVEKAIEQFIAGGEE
Ga0272445_10062344	3300028675	Sediment	MLKASDGSVWMPVTVSSACEVCKRKSKSIVYECTEGKWAGVRVVACPEHAERAIERFIAGGEE
Ga0272445_10091898	3300028675	Sediment	MLRASDGSVWLPVTVSSAPCEVCKRRSKSVVYECTEGKWAGVRVVACPEHAEQAIEQFIAGGDA
Ga0272445_10169113	3300028675	Sediment	MKASDGSVWTPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEQVIEQFIAGGEE
Ga0272445_10193095	3300028675	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSRSVVYECTKGKWAGVRVVACPEHAEKAIEKFIKGGGE
Ga0272445_10248585	3300028675	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0272445_10308164	3300028675	Sediment	MKASDGSVWTPVTVSSAPCEICKRKSRSVVYECVEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0272445_10368361	3300028675	Sediment	MKANDGSVWMPVTVSSAPCEICKRKSGSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGEE
Ga0272445_10377652	3300028675	Sediment	MLKASDGSVWLPVTVSSAPCEICKRKSKSVVYECTKGKWAGVRVVACPEHAERAIERFIAGGEE
Ga0272445_10418343	3300028675	Sediment	VLKASDGSVWMPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0272445_10555091	3300028675	Sediment	MLKASDGSVWTPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEK
Ga0272445_10582522	3300028675	Sediment	MKASDGSVWMPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVTCPEHAEKAIEKFIAGGEE
Ga0272445_10654131	3300028675	Sediment	MKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272445_10678701	3300028675	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEK
Ga0272445_10724102	3300028675	Sediment	LKASDGSVWWMVTLSSASCEICRRKSRSIVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272445_10847291	3300028675	Sediment	KASDGSVWTPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACSEHAEKAIEKFIKGGGE
Ga0272445_10853242	3300028675	Sediment	MKASDGSVWTPVTVSSAPCEICKRKSRSVVYECVEGKWAGVRVVACPEHAERAIERFIAGGEE
Ga0272445_11224022	3300028675	Sediment	PVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFIAGGDASCS
Ga0272445_11277562	3300028675	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAERAIEKFINGGEE
Ga0272449_10111687	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEICRRKSKSVVYECVQGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_10145439	3300029977	Sediment	MKASDGSVWTPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIERFIAGGDE
Ga0272449_10198974	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEICRRRSKSIVYECTEGKWAGVRVVACPEHAEKAIEKFINGGEE
Ga0272449_10371062	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_10436164	3300029977	Sediment	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGEE
Ga0272449_10450844	3300029977	Sediment	MRASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEQAIEQFIAGGDE
Ga0272449_10490532	3300029977	Sediment	MLRASDGSVWLPVTVSSAPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_10541423	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEQFIAGGDA
Ga0272449_10600024	3300029977	Sediment	MLKASDGSLWTPVTVSSTPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAERAIEKFINGGEE
Ga0272449_10612804	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEICKRKSKSVVYECTEGKWVGVRVVACPEHAEKAIEQFIAGGDA
Ga0272449_10682173	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEVCRRKSKSVIYECTEGKWAGVRVVACPEHAEKAIEKFINGGEE
Ga0272449_10823993	3300029977	Sediment	MKASDGSVWLPITVSSAPCEVCKRKSKSIVYEYTEGKWAGVRVVACPEHAERAIEKFINGGEE
Ga0272449_10825694	3300029977	Sediment	MLKASDGSIWRLVSLSSASCEVCRRKSRAVVYECVEGKWAGVRVVACPEHAEKAIEQFIAGGDE
Ga0272449_10829962	3300029977	Sediment	MKASDGSVWLPVTASSAPCEICRRKSKSIVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDA
Ga0272449_11098582	3300029977	Sediment	MLKASDGSVWLPVTVSSAPCEICKRKSKSVVYECAEGRWAGVRVVACPEHAERAIERFIAGGDE
Ga0272449_11152631	3300029977	Sediment	APCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEQVIEQFIAGGEE
Ga0272449_11221313	3300029977	Sediment	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGEE
Ga0272449_11235853	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_11248002	3300029977	Sediment	MPITVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0272449_11271602	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWVGVRVVACPEHAEKAVEKFINGGDE
Ga0272449_11329992	3300029977	Sediment	MKASDGSVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWVGVRVVACPEHAEKAIERFIAGGDERCL
Ga0272449_11465721	3300029977	Sediment	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWVGVRVVACPEHAERAIERFIVGGDE
Ga0272449_11494033	3300029977	Sediment	VLKASDESVWMPVTVSSAPCEVCKRKSKSVVYECTEGKWVGVRVVACPEHAEKAIEQFIAGGDA
Ga0272449_11724042	3300029977	Sediment	LKASDGSVWLPVTVSSAPCEVCKRKSKSIVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0272449_12157142	3300029977	Sediment	MKASDGSVWTPVTVSSAPCEICKRKSKSVVYECVEGKWAGVRVVACPEHAERAIERFIAGGEE
Ga0272449_12180302	3300029977	Sediment	MKASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDA
Ga0326760_10046914	3300033490	Hot Spring Sediment	MLKASDGSVWMPVTVSSAPCEVCKRKSRPVVYECTEGKWAGVRVVACPEHAEKAIEKFINGGEE
Ga0326760_10210753	3300033490	Hot Spring Sediment	MKASDGSVWMPVTVSSAPCEICKRKSNSVVYECVEGKWAGVRVVACPEHAERAIEQFIAGGDE
Ga0326762_10173921	3300033491	Hot Spring Sediment	RWSVMKASDGSVWMPVTVSSAPCEVCRRKSKSVVYECTKGKWVGVRVVACPEHAEKAIEQFIAGGEE
Ga0326768_053271_2_160	3300033893	Hot Spring Sediment	VTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0370516_003713_2854_3048	3300034696	Hot Spring Water	MLKASDGSVWLPVTVSSAPCEICKRKSKSVVYECTKGKWAGVRVVACPEHAEQVIEQFIAGGEE
Ga0370516_019376_1633_1824	3300034696	Hot Spring Water	MKASDGSIWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE
Ga0370516_019623_2448_2606	3300034696	Hot Spring Water	MLKASDGSVWLPVTVSSTPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEK
Ga0370516_029514_326_520	3300034696	Hot Spring Water	MLKASDGSVWLPVTVSSAPCEICRRKSRSFVYECTEGKWAGVRVVACPEHAERAIEKFINGGDE
Ga0370516_036425_171_365	3300034696	Hot Spring Water	MLKASDGSVWLPVTVSSAPCEICKRKSKSVVYECTEGKWTGVRVVACPEHAEKAIEKFINGGDE
Ga0370516_039727_516_719	3300034696	Hot Spring Water	MLKASDGSLWTPVTVSSAPCEVCKRKSKSVVYECVEGKWAGVRVVACPGHAERAIEQFIAGGEERCL
Ga0370516_040864_190_384	3300034696	Hot Spring Water	MLKASDGSLWTPVTVSSTPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEQFIAGGDA
Ga0370516_055122_23_217	3300034696	Hot Spring Water	MLKASDGSLWTPVTVSSTPCEVCKRKSKSVVYECVEGKWSGVRVVACPEHVEKAIEKFINGGDA
Ga0370516_065998_225_416	3300034696	Hot Spring Water	MKASDGSVWLPVTVSSAPCEICKRKSKSVVYECTKGKWAGVRVVACPEHAEKAIEQFIAGGEA
Ga0370516_084149_468_659	3300034696	Hot Spring Water	MKASDGSVWWMVTLSSASCEICRRKSRSIVYECTEGKWVGVRVVACPEHAEKAIERFIAGGDE
Ga0370516_090383_133_327	3300034696	Hot Spring Water	VLKASDGSVWLPVTVPSAPCEICKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDE
Ga0370516_116975_308_499	3300034696	Hot Spring Water	MKASDGSVWLPVTVSSAPCEICERKSKSVVYECVEGKWVGVRVVACPEHAEKAIEQFIAGGDE
Ga0370516_118053_55_249	3300034696	Hot Spring Water	MLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTDGKWAGVRVVACPEHAEKAIEQFIAGGDE
Ga0370516_133085_208_402	3300034696	Hot Spring Water	MLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTKGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0370516_169225_155_346	3300034696	Hot Spring Water	MRASDGSVWLPVTVSSAPCEVCKRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDA
Ga0370516_174791_190_381	3300034696	Hot Spring Water	MKASDGSLWTPVTVSSTPCEVCKRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEQFIAGGDA
Ga0370516_213521_1_153	3300034696	Hot Spring Water	MKASDGSVWTPVTVSSAPCEICKRKSKSVVYECTEGKWAGVRVVACPEHAE
Ga0370516_233680_241_435	3300034696	Hot Spring Water	MLKASDGSFWTPVTVSSTPCEICRRKSKSVVYECVEGKWAGVRVVACPEHAEKAIEKFINGGDE
Ga0370516_253147_127_321	3300034696	Hot Spring Water	MLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGDA
Ga0370516_260360_138_332	3300034696	Hot Spring Water	MLKASDSSVWLPVTVSSAPCEICRRKSKSVVYECAEGKWAGVRVVACPEHAEKAIEQFIAGGDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088087

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences