Sample 3300009591

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300009591

3300009591: Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316

Overview

Basic Information
IMG/M Taxon OID	3300009591 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127783 \| Ga0105155
Sample Name	Hot spring microbial communities from Sandy's Spring West, USA to study Microbial Dark Matter (Phase II) - SSWsed_130316
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	233530326
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	8
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Nevada, Gerlach, Sandy's Spring West
Coordinates	Lat. (^o)	40.653	Long. (^o)	-119.3749	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014385	Metagenome / Metatranscriptome	263	Y
F019254	Metagenome	231	Y
F063724	Metagenome / Metatranscriptome	129	N
F080093	Metagenome / Metatranscriptome	115	N
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F087246	Metagenome / Metatranscriptome	110	N
F088087	Metagenome	109	N
F089858	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0105155_1003216	All Organisms → cellular organisms → Bacteria	5161	Open in IMG/M
Ga0105155_1009916	Not Available	2518	Open in IMG/M
Ga0105155_1012268	Not Available	2161	Open in IMG/M
Ga0105155_1024765	Not Available	1256	Open in IMG/M
Ga0105155_1027232	Not Available	1165	Open in IMG/M
Ga0105155_1036506	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	923	Open in IMG/M
Ga0105155_1041525	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon	834	Open in IMG/M
Ga0105155_1054502	Not Available	671	Open in IMG/M
Ga0105155_1057487	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Methanomassiliicoccales → unclassified Methanomassiliicoccales → Methanomassiliicoccales archaeon	644	Open in IMG/M
Ga0105155_1062630	Not Available	604	Open in IMG/M
Ga0105155_1063355	Not Available	598	Open in IMG/M
Ga0105155_1068905	Not Available	562	Open in IMG/M
Ga0105155_1078848	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105155_1003216	Ga0105155_10032165	F063724	MPSSWLQRWRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDPVYSTRYFLWTDEKEFERTLLAPWHLPSNRWMPVSDQIYLAVASLITMTALVIHYALAKSPVWVGAVGVGVVVLAFFLPMARPMLALHSLAQTLTADTPLHIGVSRLTPAHLVYGALLYGVGRAARASAVYGILPALLVATIAQGTVFRGLPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLGASLLAVSVPAPALTAWMHMPLWWWGFVPPLGIVSGLAVEFHPLWTLSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE*
Ga0105155_1009916	Ga0105155_10099163	F084856	VLLGSTGILIFEDLRYTFTRIELTERGDAMFDISDLAIVTHIYTKPHAEALMETLPEWVKLAPSAQIFVSYYLNRFQPSDFHSLMVYDRVDFIPVANSSYGAAYDTLLERTVDKPVLILAPYAIPKEWFIGANGSLFKWFESYAVIGRYKQPRILVADAILMPLVAPVIVELGRLQMDCIAIRNDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGFPVLTLTRNCNPVRYVKKDDGRTEKAGRR*
Ga0105155_1012268	Ga0105155_10122682	F084856	MSGTFNLTIVTHIYTSQHAEALKETLPEWVRLSPSQILVGCYQKKFQPSDFQFLETYDRVELVPIDSSSYGAAYDVLLERVVGKPILILAPYVIPKDWFVGSVSKWFESYAIIGHYKQPRILVADAILMPLIAPVVVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPYNCKPVRYVRNPERQPSKAHKK*
Ga0105155_1024765	Ga0105155_10247651	F080678	MLRKVDAQTTPIERAYDDWERIWLGEREIRRFLAFTGLSAPPYNLRVENFLQFPFLRGMTARRFVQKLRRLGVTWNNDVMRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV*
Ga0105155_1027232	Ga0105155_10272322	F080678	MFVKKVDVRTVPITQAYENWECIWLGEREIRRFLAYTGLTAPPYNLRVEDFLKFPYLRGMTARRFVQKLRRLGVGWSWNDDAVRRSVLLAVGYRLLEIEEFEHNRIFGRKEEVSVNV*
Ga0105155_1036506	Ga0105155_10365063	F089858	MEWVEYLVRLRFHVDGFYAEKLTREYVEREVRRKLSIPELEEEGLMEIIVSETGVDGLLNIPVKRGEIWIKELEDGRFTINLDDPDDPKITCAEVQVVHEDLEEETIKAKGVKYVIIGDIQDMGRARFVRIREGVREVEEE*
Ga0105155_1041525	Ga0105155_10415252	F089858	MEWVEYLVRLRFHVDGFYAEKLTKEYVEREVRRKLSIPEFEESGLMEIMVSKVGVDGLLNIPVKHGEIWVEELEDGRFAINLDDPDDPKITCVEVQVVHEDLEEEAIKVKGVKYAILGDIPDMGKARLVRVRRGVREVEEE*
Ga0105155_1054502	Ga0105155_10545022	F088087	MMMMLKVTDGSVWKEVGVSKSSCEICGRKGSARIYECVEGKWAGVRVVACPEHAQKAVEVFIAGGEE*
Ga0105155_1057487	Ga0105155_10574872	F019254	MPNERIHEALSHLRDEWPLRVLLSALAERVAELAALVGRASAQNLPPEFLTRIRAIEEEMRELSLLCQRPPAPEGRRKRKKVEDLPLF*
Ga0105155_1062630	Ga0105155_10626302	F080678	MFGRQVDTQTTPIAQVYENWERIWLGEREIRRFLAFTGLSALPYNLRVENFLKFPYLRGMTARRFVQKLRRLGVTWSWNEAVVRRSVLLSVGYKLCEVEEFEHNRIFGRKEVGANV*
Ga0105155_1063355	Ga0105155_10633552	F014385	VKRPSREVGDWWDLVQLALVRSALEQLSPEEEQALWLYAEGARLTKQQRTLAEATLAKVRRMLNL
Ga0105155_1068905	Ga0105155_10689051	F080678	MLRKVDAQTTPIERAYDDWERIWLGEREIRRFLAYTGLTAPPYNLRVENFLKFPFLRGMTARRFVKKLRRLGVTWSWNDDSVRRSILLAVGYRLLEIEEFEHYRIFGRKEVSVNV*
Ga0105155_1076651	Ga0105155_10766511	F080093	VQSVLHILRELVASGGVRLVGDAPDEERALFTQLTATRGFAQALRHLATAHVAGAAVVEIVWGDDYMPHALRPAPPEMVQFGIGEDGEIVAVRLTTSAGVQELPLTHAIIVDAYPAWHIYGVRELPIHALSKYLQAYDRVLRSMDLYLQRHAVPTAVAKTPASYTETETQQLY
Ga0105155_1078848	Ga0105155_10788481	F087246	MDWETRMDETYELRKALDALEHAQQVMVHHAQGYRQVATLAGLALERIGAVQGSQNWVQLQEALHEVEALLVAIVQQATERGENLMECANGYENAKR*

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