NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300005852

3300005852: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPADES assembly)



Overview

Basic Information
IMG/M Taxon OID3300005852 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0067861 | Gp0093346 | Ga0079998
Sample NameThermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG (SPADES assembly)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85136290
Sequencing Scaffolds15
Novel Protein Genes20
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1
Not Available4
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.376Long. (o)-110.69Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013155Metagenome / Metatranscriptome274Y
F021443Metagenome / Metatranscriptome219Y
F023604Metagenome / Metatranscriptome209Y
F028182Metagenome / Metatranscriptome192N
F038745Metagenome / Metatranscriptome165Y
F043237Metagenome / Metatranscriptome156Y
F051572Metagenome / Metatranscriptome144N
F067776Metagenome / Metatranscriptome125N
F069506Metagenome124N
F075483Metagenome / Metatranscriptome119Y
F075803Metagenome / Metatranscriptome118Y
F088087Metagenome109N
F092976Metagenome106Y
F096328Metagenome104Y
F104114Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0079998_101732All Organisms → cellular organisms → Bacteria43231Open in IMG/M
Ga0079998_106325All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.1959Open in IMG/M
Ga0079998_107827Not Available591Open in IMG/M
Ga0079998_108348All Organisms → cellular organisms → Bacteria3886Open in IMG/M
Ga0079998_109173All Organisms → cellular organisms → Bacteria15800Open in IMG/M
Ga0079998_113033Not Available2904Open in IMG/M
Ga0079998_115906All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber10441Open in IMG/M
Ga0079998_116039All Organisms → cellular organisms → Bacteria10115Open in IMG/M
Ga0079998_116177Not Available733Open in IMG/M
Ga0079998_117057All Organisms → cellular organisms → Bacteria37497Open in IMG/M
Ga0079998_119667All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens7849Open in IMG/M
Ga0079998_122483Not Available540Open in IMG/M
Ga0079998_122652All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens3699Open in IMG/M
Ga0079998_129701All Organisms → cellular organisms → Bacteria27665Open in IMG/M
Ga0079998_130334All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → Pyrobaculum ferrireducens9171Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0079998_101732Ga0079998_10173236F075803MTSLKALSASPSPAFMRFRTSASEVPNATLWPFLHNLHKPPLHKKLHFRRIPKKAFAIGGFDTTSPRMTLLRSLLEIFWNQGAALERRSTPSTPKGATFLFVYSYITPHGACRFWFAAHLRLHPVLESRVFIEPSLGEPHPYLICGSTLGTFPILNPEKEPTLPKCSFNSTPPEKNQKGYAYA*
Ga0079998_106325Ga0079998_1063251F075483MIELLAVQAVTTLALAFFVIKLRRELWPMFAVAKSGEVGFWVRSADVLGVVMPQFEASKVVIKVRWLFSEEIHMTYSFRVYDVAMHPLRRHHYVRWKAWMSGDDRYRCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK*
Ga0079998_106325Ga0079998_1063252F013155MELYQMVVIVIALANLAVTIWLLRLLIPIWQTLRKVVFALDHYDFDKLAKQFLSNEKPLAENVIVKTSEKKEEGYREISITRVYKKPLDAKEVWEGIVRQMAEKLQ*
Ga0079998_107827Ga0079998_1078271F051572VHFLTPRLDLCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGQNRERIRNVLLKKAGETLAQLRRELGDKTPAEALLAKLAELFLKELKA*
Ga0079998_108348Ga0079998_1083483F104114MERLRLWLSLTQDEKFAAAEKELKDAVVARYDEFADEWSLVRGVEDIAPSALAESVIQTVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETLRDAVQAVVDLADIIAEKLPVVRSQVSLIKEVK*
Ga0079998_108348Ga0079998_1083488F069506MQSEQLTYTEEQIKQAIEEVWQELLQEADAEDYSLEEYLEDYRKYWDDPDFPNDVPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTFDGVNVHRFINVAGTVVNYEDIIRLVIKLLDQIQSALANA*
Ga0079998_109173Ga0079998_10917313F088087VLKASDGSVWLPVTVSSAPCEICRRKSKSVVYECTEGKWAGVRVVACPEHAERAIERFIAGGDE*
Ga0079998_113033Ga0079998_1130331F067776MALMSLGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFSFEAPGMRGYVTRWG*
Ga0079998_115906Ga0079998_11590610F043237MDLEKTARYIAQLSRHGYKYAIIGKLVRYDRELVKRLEYDGFVFYLCRLPSKKEVVSYCLPRTEGPFKVYCLSSKPLEFPNAPLKLHYDEKSQRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYIAQVKKLLRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKNQYGLKPK
Ga0079998_115906Ga0079998_1159066F043237MDLEKTARYIAQLSRHGYKYAVLGELSNYNRELVKRIDLEGFVFYLCRLQTKKEVISYCLQKADKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFINACLNAIEKASEVKYPSPKLYIAQVNKALRQLYGILAYTYNDRERLSAIKRKVKHWVVEALKNQYGLKPKDAMLDYSRYVLKFSDVLRKKKSASVASATEGGRGRG*
Ga0079998_116039Ga0079998_1160391F028182MPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSAVPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP*
Ga0079998_116177Ga0079998_1161772F021443TFYNYVYSYYQTNEILSFAIMDLVFKIINQQKRKSIILKKRKPIIHLLNYIDILNFNSNSSKFNIDFRLGNKYKTPLIYNLYLHRSSHRRSYYASFYKDSLNVIERENLCIIKLEDDYASRIQPKNVNLIAMLMHMLEQKEIDMIDVNGIIFYCVFLM*
Ga0079998_117057Ga0079998_11705720F023604MAMDISVPKAAVKSRAVEKADLKGMRPPAGEEDKPWQAYANETNFCKVKIDYISN*
Ga0079998_119667Ga0079998_11966710F075483MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPVHAGFWIRSIDVMVLAAPQLEVAKTVIKIRRLLEEELFLKYSLKFYDVAMHPTSQHHYRMWKAWMQGDDRYKCEVEKPRGLSRLYNKAVEVFCREKEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT*
Ga0079998_119667Ga0079998_1196679F013155VAVIAIALANLAVTVWLLRLLIPVWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQEGFVRQMAERLQ*
Ga0079998_122483Ga0079998_1224832F096328MTEAAYFWSKEAETILAPYVQALVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPHLYLLYPWGAIWDGSLEFLYTCPSILIPESVVQKVCEIYNRMVL*
Ga0079998_122652Ga0079998_1226523F038745MAVCGKLMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELLEVMEGRVKLEELGLPAPALKALAEELGPEPRWLDALAASFFRLYLGVYRRRRVDGRDVFLALCFWAQKKRREDPWNPLWRAAELKPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV*
Ga0079998_122652Ga0079998_1226524F051572MTSRTHSGPFAEVRTFADVVLEGGCKKFLQFLNAYFDLCVLAVLIKATPAGPMVRLRPEIVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA*
Ga0079998_129701Ga0079998_12970132F092976MMVQEILHWKQELRRVRQEFLQIWRECPKCGANWADISWDAESDHEFLLVECKGHHLFRADEEFWLYDCDGMGVYVPSEDCEAEVSAYAG*
Ga0079998_130334Ga0079998_1303343F013155MELYQVAVVVIALANLAVTVWLLRLLIPVWQTLRKVVFVLDQYDFDKLAKEFLSNEKPVAETIDIKVSEKQEEGYKELTVTRVYKKPLDPREIQENFVRQMAERLQ*
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